Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272020g00010 ATGGCATCCGCCTCTTGTTCCACTTCAATCCCACCACCACCACAACCACCAACATCATCATACACCTATCACGTTTTCTTGAGTTTCAGAGGAGAAGACACTCGCAATGGTTTCACTTCCCATCTCTATGCCGCCCTCAACAGAAAGGGACTCACTACCTACAGAGATGACAAGAACCTTCGCAAAGGCGATGTTATTTCTGATGAACTTGTAAAAGCAATTGAAGAGTCTATGTTTGCAGTCATTGTTTTCTCACCAGATTACGCTTCCTCCAGTTGGTGCTTGGATGAGCTCTGCAAGATCATAGAGTGCAAGAACAAGCTAGGGCTACAGATGGTGGAAGTGTTCTATGATGTGGAGCCTTGTGATATGAGGCACCAACTTGGAACTTTCAAGGAAGCGTTTGAGAAGCACGAAGGGAGACATGAGAGTGAGAAGGTTAAAAGATGGAGAAATGCGTTAAAACAAGTTGCTGCTTATTCTGCTTGGAGTTCCAAAAATCAGGACGAGGCAGTACTTGTGGAAAAGATTGCTCAACATATATTTGAAACATTGATTCCAAAGTTGCCATCTTCAATGAAGGATCTTGTGGGGATTGAATCAAGAGTAGAAAAAGTGATTAGTCAAATAGGCCTTGGATTGAATGATATTCGGTACATTGGCATATGGGGAATGGGAGGGATGGGTAAGACAACTATTGCTAGAGCAATCTTTGAAAGCATTCGAAGTAGATTCGAAGTTACTTGCTTTCTTGCCGATGTAAGGGAGCAATGCGAGAAACAAAATGTTGCTCACATACAAAAGCAACTTCTTGATCAAATGAATATGAGTTCAAATGCTGTCCATAACGAGTATGACGGGAGAACAATAATTCAAAACTCTTTATGTCTCAAAAAGGTTCTTCTTGTTCTTGATGATGTAAATGATGAAAAACAATTAGAGAATTTGGCTGGGGAGCAAAATTGGTTTGGTCCTGGAAGCAGAATAATAATCACAACTAGAGACATACACCTGCTAAAGGAACAAGAGGTGTGTGAAATTTATGAGGTTGAAGGGTTAGGAAAAGCTGAAGCCTTTAACCTCTTTTGTCTGAAAGCTTTTAAACACCCGGAACCTACAGAAGGGTTTTTAGATTTGTCCGAAGAAGTGGTCAAGTACAGTGGTGGTCTTCCATTGGCACTTAAAGTATTGGGTTCCCATCTTTTTGGTAGATCCATTGAGGTTTGGCGCAGTGCTATCGAAGATATAAAGAAATCTTCACATTCCAAAATTATTGATGTACTGAAAATAAGCTATAATGGTTTACGTACTACGGAAAAAGACATTTTTCTAGATATTGCTTGTTTCTTTAAAGGAGAATTGAAAGATTATGTAACAGAGGTATTAGAACGATGTGGTCATAATGCTGAAATTGGTATTGATATTTTGATTAATAGATCATTGGTTACTATAAATAAAAATGCATTTTTGGGGATGCATGATCTGGTTGAAGAAATGGGCAAACTCATTGTAATTGAAGAATCTCCAAATGATGTTAGTAAGCGTAGCAGATTGTGGTGTTACGAGGATATTGACTCTGTTATTCTTTCTCAAAAGCAGGAAATTGAAGCAACTCAAAGCATGGTTCTACATTTGCACTGGTGGGATACTGAAGAGAATTGGAGTGATTTGGATATAAGAGGTTTATCTTTCTCAAAGCTACAGCTTCTTATTTTAGATGGCGTGTACGCTCCCATTCTCTACAATATTCCTTCTACATTAAAGGTTTTGCGCTGGAGAGAATGTCCAATGGAAACTCTGTGCCTCACAGATCAGCGCTATGAACTTGTTGAAATTGACCTGTCTGGAAGCGAAATTGTACAATTATGGGAGGGAAAGAAGTTTCTAAGTAAGTTAGAGCACTTGAATCTGCCCGGCTGCTATATGCTGGAGGAAATACCAGATCTTTCTGGGGCTCCCAATCTTAAAACACTTGTTCTTGAAGATTGTGATCAGTTGAATTATATTCACCCATCTCTTACCGACCACAAGAGCCTTGTTGAATTGAATTTAAGGGAATGTAATCATCTTGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCAAGAAACTAGATCTATCCTGGTGCACTAGTTTGAGAAGAGTGCCAGAATTTGGGGAATGCATGAAACAGTTATCGATTCTTTATTTCGGACTTGAAGACATAGGAGAGCTACCCAGGACGTTTGGAAATTTGGTTGGCCTCACTGAGTTATACTTGGATGTACAGTATATTGGTGCCCCCATATCACTTGGATGTTTCGTTTGCCTAAAGAAGTTGTGGTTATACTTTGATGCATACAACTACAGGCATGAAATCCATAATACAGATGTACTTTTGAGTTCTGTGTCTCTTCTAACCTCTTTGACTAGTCTGACATTAAATGAATGTTTTCTCGAATCTCAAGAGTCCATCCATCACTACGATCTTGGCCACTTACCGTTCTTGACGAATTTGGATTTATCGTACAACTCTTTTAAAAGAGTTCCGATAAGTATCCATCAACTCCCCAAACTTACACAGCTGCAGCTAATTAATTGCTCTAAATTGGAGGTTTTGCCAGATCTTCCATCAAGTCTAAGAGTATTAGATGCAAGTGGTTGTGATTCACTGGCTGCATCCAATGTGAATGACGTAATATCAAAGGCGTGGTGTTTCTTCGCAGAATCAACTAGCCAAGATGGTGAAGACGTCTTTGAAATGGTGATCACTGGGAAGGAAATTCCAGCATGGTTTGAGCATCAGGAGCAAGGTAACGGAGTATCAGTCCCATTCCCGCATAATTGCCCTTCAACTCAAACCATGGCACTTTCTCTCTGTTTTGTATTTGATGGTCAATGCTACGTGGTGAAGCCTTCAATGATCTGCTGCAATGGTAAAGAATTCATCAACAAGAGTTTATTAAAGGTGTTGCCCTGGATAGATTCTGGGAATATGTGCATTGTCTTCTTGAATGGTTACTTTTTTAGTAACCTGTTAGGCCAACACAATCGCTTCCATATCCTATTTAATCATACTTATAATATTGATATCCCTGTAACAAGATCTGCAGCACATTGGGTGTGTAACCAAGACATTCAAGATTTCAAGAAAAGAAAAGCAACTCTTCAACTGAGTAAGCAAGACATGATGCCACTCTATGAAGAAGACGAAGGGTGTGCATCTCACCAAAGCTCTCACAAAACTGAACTCTTACCTCTCTTCCCATTGCTTCCCGGTTTCCACAACACTCACTTCTCATAG 3285 0.3967 MASASCSTSIPPPPQPPTSSYTYHVFLSFRGEDTRNGFTSHLYAALNRKGLTTYRDDKNLRKGDVISDELVKAIEESMFAVIVFSPDYASSSWCLDELCKIIECKNKLGLQMVEVFYDVEPCDMRHQLGTFKEAFEKHEGRHESEKVKRWRNALKQVAAYSAWSSKNQDEAVLVEKIAQHIFETLIPKLPSSMKDLVGIESRVEKVISQIGLGLNDIRYIGIWGMGGMGKTTIARAIFESIRSRFEVTCFLADVREQCEKQNVAHIQKQLLDQMNMSSNAVHNEYDGRTIIQNSLCLKKVLLVLDDVNDEKQLENLAGEQNWFGPGSRIIITTRDIHLLKEQEVCEIYEVEGLGKAEAFNLFCLKAFKHPEPTEGFLDLSEEVVKYSGGLPLALKVLGSHLFGRSIEVWRSAIEDIKKSSHSKIIDVLKISYNGLRTTEKDIFLDIACFFKGELKDYVTEVLERCGHNAEIGIDILINRSLVTINKNAFLGMHDLVEEMGKLIVIEESPNDVSKRSRLWCYEDIDSVILSQKQEIEATQSMVLHLHWWDTEENWSDLDIRGLSFSKLQLLILDGVYAPILYNIPSTLKVLRWRECPMETLCLTDQRYELVEIDLSGSEIVQLWEGKKFLSKLEHLNLPGCYMLEEIPDLSGAPNLKTLVLEDCDQLNYIHPSLTDHKSLVELNLRECNHLETLGDKLEMSSLKKLDLSWCTSLRRVPEFGECMKQLSILYFGLEDIGELPRTFGNLVGLTELYLDVQYIGAPISLGCFVCLKKLWLYFDAYNYRHEIHNTDVLLSSVSLLTSLTSLTLNECFLESQESIHHYDLGHLPFLTNLDLSYNSFKRVPISIHQLPKLTQLQLINCSKLEVLPDLPSSLRVLDASGCDSLAASNVNDVISKAWCFFAESTSQDGEDVFEMVITGKEIPAWFEHQEQGNGVSVPFPHNCPSTQTMALSLCFVFDGQCYVVKPSMICCNGKEFINKSLLKVLPWIDSGNMCIVFLNGYFFSNLLGQHNRFHILFNHTYNIDIPVTRSAAHWVCNQDIQDFKKRKATLQLSKQDMMPLYEEDEGCASHQSSHKTELLPLFPLLPGFHNTHFS 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272020g00010 1094 SUPERFAMILY L domain-like 557 886 - -
Stsc272020g00010 1094 Gene3D - 19 185 IPR035897 -
Stsc272020g00010 1094 Pfam C-JID domain 918 1035 IPR045344 -
Stsc272020g00010 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 446 IPR027417 -
Stsc272020g00010 1094 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 161 IPR035897 -
Stsc272020g00010 1094 Gene3D - 353 436 IPR042197 -
Stsc272020g00010 1094 Gene3D Ribonuclease Inhibitor 727 957 IPR032675 -
Stsc272020g00010 1094 ProSiteProfiles TIR domain profile. 21 185 IPR000157 GO:0007165
Stsc272020g00010 1094 PRINTS Disease resistance protein signature 219 234 - -
Stsc272020g00010 1094 PRINTS Disease resistance protein signature 294 308 - -
Stsc272020g00010 1094 PRINTS Disease resistance protein signature 697 713 - -
Stsc272020g00010 1094 PRINTS Disease resistance protein signature 387 401 - -
Stsc272020g00010 1094 Gene3D - 186 347 IPR027417 -
Stsc272020g00010 1094 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 719 IPR044974 GO:0006952
Stsc272020g00010 1094 Gene3D Ribonuclease Inhibitor 530 726 IPR032675 -
Stsc272020g00010 1094 SMART till_3 22 160 IPR000157 GO:0007165
Stsc272020g00010 1094 SUPERFAMILY "Winged helix" DNA-binding domain 422 526 IPR036390 -
Stsc272020g00010 1094 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 186 - -
Stsc272020g00010 1094 Pfam NB-ARC domain 201 432 IPR002182 GO:0043531
Stsc272020g00010 1094 Pfam TIR domain 23 198 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272020g00010 Stsc-Chr272020 49843 55643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272020g00010 18 877 WRKY Transcription Factor Family AT4G12020 29.054 2.09e-80 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272020g00010 - - adu:107485814 1232.62