LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272020g00009	ATGGCATCCGCCTCTTCTTCCACTTCAATTCCACCACAACCATCAAGATCATCATGCACCTATCACGTGTTCTTGAGTTTTAGAGGAGAAGACACTCGCACTGGATTCACTAGCCATCTCTATGCCGCCCTCAACAGAAAGGGAATTACTACCTACAAAGATGACAACAACCTTCGCAAAGGCGATGTTATTTCTGATGAACTTGTCAAAGCAATTGAAGAGTCTATGTTTGCTGTCATTGTTTTCTCACCAGACTTCGCTTCCTCCAGTTGGTGCTTGGATGAGCTCTGCAAGATCATGGAGTGCAAGAACAAGCTGGGGCTTCAGATGGTGGAAGTGTTCTACGGTGTTAAGCCATGTGATGTGAGGCATCAAATTGGAACCTTCAGAGAAGCTTTCGAGAAACATGAACAGAGATACGACAGGGAGAAGGTTAAAAGATGGAGAGATGCGTTAAAACAAGTTGCTGCTCATTCTGGTTGGACCTCCAATAATCAGGACGAGGCAATACTTGTGGAGAACATTGCTCAACATATATTTGAAACATTGGTTCCAAAGTTGCCATCTTCTTTGAAGAATCTTGTGGGGATTGAATCAAGAGTGGAACAAGTGATTCATCAAATAGGCCTTGGATTGAAGGATGTTTGCTACATCGGCTTATGGGGAATGGGCGGTATAGGTAAGACCACTATTGCTAGAGCCGTATATGAAACCATTCGAAGCAGATTTGAAGTTACTTGCTTTCTTGCCGATGTAAGGGATCTATGTGAGAAAAAAGACATTGTGCACGTACAAAAACAACTTCTTGATAAAATGCATATTGGTTCAGCTGCTGTTTATAGTGAGTATGATGGGAGGAAAATAACTCAAAGCTCTTTACGCCTAAAAAAGGTTCTTCTTGTTCTTGATGATGTAAATAATGAAAAGCAATTAGAGAATTTGGCTGGGGAGCAAGATTGGTTTGGTTCCGGCAGCAGAATTATCATTACAACAAGAGACATACATTTGCTGAAGCAACAAGAGGTGCATGAGACTTATAATGTTGAAGGATTAGTGGAAAGTGAAGCCTTTAATCTCTTTTGTTCGAAAGCTTTTAAACGGTTAAAACCAGCAGAAGGGTTTTTGGATTTGTCCGAAGAAGTGGTCAAGTACAGTGGTGGTCTTCCATTGGCACTTAAAGTATTGGGTTCCCATCTTTTTGGTAGATCCATTGAGGTTTGGCGCAGTGCTATCGAAGATACAAAGAAATCTTCACATTCTAAAATTATTGATGTCCTGAAAATAAGCTATAATGGTTTATGTACTGCGGAAAAAGACATATTTCTAGATATTGCTTGTTTCTTTAAAGGATATGAAAAAGATTATGTAACAAAAATATTAAAACGATGTGGTCATAATGCTGAAATTGGTATTGATATTTTGATTAATAAATCGTTGGTCACATTAGAGAAGGGTCGGTATGTGGATAGTGTTTTTTTTGGGATGCATGATCTGGTTGAAGAAATGGGCAAACTCATTGTAATTGAAGAATCTCCAAATGATGTTAGCAAGCGTAGCAGATTGTGGAGTTACAAGGATTTTGACTCTGTACTTGTTCAAAAGCAGCAACTCAACGCAACTCAAAGCATGGTTCTACGTATGTGCTGGCTGAATACTGGAGAGAATTGGAGAGATTTGGATATAAGAGGTTCATCTTTCTCAAAGCTACAGCTTCTTATTTTAGATGGCATGACAGCTCCCATTCTCTACGATATTCCTTGTACATTAAAGGTTTTTCATTGGAGAGCTTGTCCAATGGAAACTCTACCCTTTGCAGATCATCAACACTATGAACTTGTTGAAATTGATTTGCATGATAGCAAAATTGTACAAATATGGGATGGAAAGAAGTTTCTAAATAAGTTACAGCACTTGAATCTTTCCAGCTGCTTAATGCTGAAGGAAACACCAGATCTTTCTGGGGCTCCCAATCTTAAAACACTTAATCTTCAATATTGTGTTAAGCTGAATTATATTCACCCGTCTCTTACATACCACAAGAGCCTTGTTGAATTGAATTTACGTGGATGTAATATTCTTGAAACACTTGGAGAGAAATTGGAGATGAGGTCACTCAAGGAAATAGATGTACAGGTCTGCCATGGTTTGAGAAGAGTGCCAGAATTTGGGGAATGCATGAAACAGTTATCGATTCTTAGTTTGGAACTTGAAGACATAGGAGAGCTACCCAGTACGTTTAGAAATTTGGTTGGCCTGACTGAGTTGTACTTAAATGTACGGAAGTATATTGGTCGTCCCATATCACATGGATGTTTCCTTTGCCTAAAGAAGTTGTCGTTACACTTTGGGGCATACGACTACAGGTGTGAAATCCAAAATATGGATGTACTTTTGAGTTCTGTCTCTCTTCTAACCTCTTTGAGCAGTCTGAAATTAATTCAATGTTTTCCCAAATCTCAAGAGTCGATCCCTGACTACGATCTTGGCCACTTAGCGTTCTTGACCAAGTTGGATTTATGGATCAACCATTTCAAAAGAGTTCCGATAAGTATCCATCGACTCCCCAAACTTAGACGGCTGCGGCTAAATTATTGCTCTAAATTGGAGGTTTTGCCAGATCTTTCATCAAGTTTAAGAGTATTAGATGCAAGTCATTGTGATTCACTAGATGCAACCAATGTGAATGATGTAATATCAAAGGCGTGCTGTGTCTTTGCAGAGTCGGCTAGCCAAGATGGTGAAGACGTCTTTGAAATGGTGATCCCTGGGAAGGAAATTCCAGCATGGTTTGAGCATCAGGAACAAGGTAACGGAGTATCACTCTCATGCCCTTCAACTAAAACCATCGCACTTTCTCTCTGTTTCGTATTTGATGGTCTATTGTTGGGACTGGAACCTCCAGTGATCTGCTGCAATAGTAAAGGATTCATCAGCAAGAGTTTATTAAAGGGGAAGCACTGGTGGGATAGTGGGAATATGTACATTGTCTTGTTGAATGGTTACTGTTTTAGAAACCTGTTAGGCCAAGACAATCGCTTCCATATCATATTTTCCGATAATCCTTACAATAACTATGTAACGAGATCTGCAGCACGTTGGGTGTGTAACATTCAAGTTCCAAATTTCAAGGAAAGAAAAGCAACTCTTGAAATGAACATGGACTTCATCCCACTGTATGAACAAGAGGAAGGGTGTGCATCTCACCGAAACACTGACCCACCAGAACTCTTACCTCTCTTCCCGTTGCTTCCCGGTTTCCACAACACTCAGTTCTCATAG	3279	0.3992	MASASSSTSIPPQPSRSSCTYHVFLSFRGEDTRTGFTSHLYAALNRKGITTYKDDNNLRKGDVISDELVKAIEESMFAVIVFSPDFASSSWCLDELCKIMECKNKLGLQMVEVFYGVKPCDVRHQIGTFREAFEKHEQRYDREKVKRWRDALKQVAAHSGWTSNNQDEAILVENIAQHIFETLVPKLPSSLKNLVGIESRVEQVIHQIGLGLKDVCYIGLWGMGGIGKTTIARAVYETIRSRFEVTCFLADVRDLCEKKDIVHVQKQLLDKMHIGSAAVYSEYDGRKITQSSLRLKKVLLVLDDVNNEKQLENLAGEQDWFGSGSRIIITTRDIHLLKQQEVHETYNVEGLVESEAFNLFCSKAFKRLKPAEGFLDLSEEVVKYSGGLPLALKVLGSHLFGRSIEVWRSAIEDTKKSSHSKIIDVLKISYNGLCTAEKDIFLDIACFFKGYEKDYVTKILKRCGHNAEIGIDILINKSLVTLEKGRYVDSVFFGMHDLVEEMGKLIVIEESPNDVSKRSRLWSYKDFDSVLVQKQQLNATQSMVLRMCWLNTGENWRDLDIRGSSFSKLQLLILDGMTAPILYDIPCTLKVFHWRACPMETLPFADHQHYELVEIDLHDSKIVQIWDGKKFLNKLQHLNLSSCLMLKETPDLSGAPNLKTLNLQYCVKLNYIHPSLTYHKSLVELNLRGCNILETLGEKLEMRSLKEIDVQVCHGLRRVPEFGECMKQLSILSLELEDIGELPSTFRNLVGLTELYLNVRKYIGRPISHGCFLCLKKLSLHFGAYDYRCEIQNMDVLLSSVSLLTSLSSLKLIQCFPKSQESIPDYDLGHLAFLTKLDLWINHFKRVPISIHRLPKLRRLRLNYCSKLEVLPDLSSSLRVLDASHCDSLDATNVNDVISKACCVFAESASQDGEDVFEMVIPGKEIPAWFEHQEQGNGVSLSCPSTKTIALSLCFVFDGLLLGLEPPVICCNSKGFISKSLLKGKHWWDSGNMYIVLLNGYCFRNLLGQDNRFHIIFSDNPYNNYVTRSAARWVCNIQVPNFKERKATLEMNMDFIPLYEQEEGCASHRNTDPPELLPLFPLLPGFHNTQFS	1092

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272020g00009	1092	Pfam	TIR domain	21	196	IPR000157	GO:0007165
	Stsc272020g00009	1092	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	184	-	-
	Stsc272020g00009	1092	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	444	IPR027417	-
	Stsc272020g00009	1092	PRINTS	Disease resistance protein signature	292	306	-	-
	Stsc272020g00009	1092	PRINTS	Disease resistance protein signature	217	232	-	-
	Stsc272020g00009	1092	PRINTS	Disease resistance protein signature	630	646	-	-
	Stsc272020g00009	1092	PRINTS	Disease resistance protein signature	385	399	-	-
	Stsc272020g00009	1092	Gene3D	-	351	434	IPR042197	-
	Stsc272020g00009	1092	ProSiteProfiles	TIR domain profile.	19	183	IPR000157	GO:0007165
	Stsc272020g00009	1092	SUPERFAMILY	"Winged helix" DNA-binding domain	420	530	IPR036390	-
	Stsc272020g00009	1092	SMART	till_3	20	158	IPR000157	GO:0007165
	Stsc272020g00009	1092	SUPERFAMILY	L domain-like	548	888	-	-
	Stsc272020g00009	1092	Gene3D	-	184	347	IPR027417	-
	Stsc272020g00009	1092	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	754	IPR044974	GO:0006952
	Stsc272020g00009	1092	Gene3D	-	18	183	IPR035897	-
	Stsc272020g00009	1092	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	161	IPR035897	-
	Stsc272020g00009	1092	Gene3D	Ribonuclease Inhibitor	522	719	IPR032675	-
	Stsc272020g00009	1092	Pfam	NB-ARC domain	200	430	IPR002182	GO:0043531
	Stsc272020g00009	1092	Gene3D	Ribonuclease Inhibitor	720	901	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272020g00009	Stsc-Chr272020	36723	41180	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272020g00009	12	871	WRKY Transcription Factor Family	AT4G12020	28.442	1.17e-75	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272020g00009	-		-	ahf:112797493	1190.25