Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272020g00004 ATGGCATCCGCCTCTTCTTCCACTTCCATCCCACCCCAACCACAACCACCAACATCATACAGTCATCACGTGTTTTTGAGTTTCAGAGGAGAAACTCGCACTAGATTCATTAGCCATCTCTATGCCGCCCTCCAAAGGAAGGGAATCAGAACCTACAAAGATGACAAAAACCTTCGCAAAGGCGATCTTATTTCACATGAACTTCTGAAAGCAATTGAAGAATCTATGTTTGCAATCATTGTGTTCTCACCAGACTACGCTTCCTCCAGTTGGTGCTTGGATGAGATCTGCAAGATCATCGAATGCAAGGACAAGCAGGGGCTTCAGATGGTGCAAGTGTTCTACCGTGTGGAGCCTTCTGATGTGAGGTACCAGAAAGGAACCTTTCAGAAAGCTTTTGAGGAACACAAACAGAAAGGGAGACATGACAGTGAGAAGGTTCAAAGATGGAGAAATGCGTTAAACAAAGTTACTGAGCATTCTGGTTGGACCTACAAGAGTGAGCCGGACGAGGCAGCACTTGTGGAAAAAATTGCTCAAGGTATATTTGATTTTTTGATTCCAAAGTTGCCATCTTCAGTGAAGGATCTTGTGGGGATTAAATCAAGAGTGGAGCAAGTGATTAGTAAAATAGGCCCTGAATTGAAAGATGTTCGCTACATCGGAATATGGGGAATGGGCGGCATAGGTAAGACAACTCTTGCTAGAGCCGTCTTTGAAACCATTAGAAGTAAATTTGAAGTTGTTTGCTTTCTTGCCAATGTAAGGGAACAATGTGAGAAAAAAGATATTGTCCACGTACAAAAACAACTTCTTGATCAAATGCAAATAGGTTCAGCTAATGTTTTTAGTGAGTATGATGGGAGCACAATAATTCAAGACTCTTTACGTCTCAAAAAGGTTCTTCTTGTTCTTGATGATGTAAATCATCAAAAGCAATTAGAGAATTTGGCTGGGGCGCAAGATTGGTTTGGTTCTGGCAGCAGAATAATCATCACAACAAGAGACATACATTTGCTAAAGGGACATGAGGTGGAAGAAACTTATAATGTTGAAGGATTAGTGGGAAGTGAAGCCTTTAACCTCTTTTGTTCGAAAGCTTTTAAACAGTCAGAACCTATAGAGGGGTTTTTGGATTTGTCTAAAGAAGTGGTGAATTATAGTGGTGGTCTTCCATTGGCACTTAAAGTATTAGGTTCCTTTCTTAAAGGTAGACCTATTGCGGTTTGGCATAGTGCTATTGAAAAAATAAAGAAGTCCTCACATTCTGAGATCATTGATGTATTGAGAATAAGCTATGATGGTTTAGATTTTATGGGAAAGAATATTTTTCTAGATATTGCTTGTTTCTTTAAAGGATATAAGAAAGATTATGTAACAAAGATATTAGAAGGATGTGGTCATGATGCTGAAATTGGCATTGATATTTTGATTAATACATCATTGGTCACATTAGTGAAAGATAAGTTTGGGAATGTTATTCTGGAGATGCATGATCTGCTTGAAGAAATGGGCAAACTTATTGTAATTGAAGAATCTCCAAATGATGTTAGTAAGCGTAGCAGAGTGTGGAGTTACAAGGATGTTGATTTTGTAGTTACTCAAAAGAAGGACTTTGAAGCAACTTATGGCATCCGTTTGGATAACTTCAGTTCGAGAGATTTTGATATAAGAGGTTCCTCTTTCTCAAAGCTACAACTTCTTATTTTAGATGGCGTGAAAGCTCCCATTCTCTACAATATTCCTTGTACATTAAAGGTTTTGCATTGGAGGGCTTGTCCAATGGAAACTCTACCCTTTGCAGATCATCAACACTATGAACTTGTTAAAATTGATCTGCATGATAGCAAAATTGTACGAATATGGGATGGAAAGAAGTTTCTAAGTAAGTTACAGCACTTGAATCTGTCCCACTGCAATAAGCTGAAGCAAACGCCGGATCTTTCTGGGGCTCCCAATCTTAAAACACTTTATCTTGAATATTGTCACCAGCTGAATAAAATTCACCCGTCTCTTACCGACCACAAGAGCCTTGTTGAATTGAATTTATGTGGATGTAGTAGTCTTGAAACACTTGGAGACAGATTGGAGATGAGTTCACTCAAGAAATTAGATATATACAACTGCACTAGTTTGAGAAGAGTGCCAGAATTTGGGGAATGCATGAATCAGTTATCGATGCTTACTTTGGATGTTGGAGTCATAGAAGAGCTACCCAGTACTTTTGGAAATTTGGTTGGCCTCACTGAGTTGTACTTAGATGTATGGAATTGTATTGGTCGTCCCATATCACTTGGATGTTTCCTTTGCCTAAAGAAGTTGGAGTTAAAGGCATACTTCGGCTTTGCTTGTGTTCCATACGACATCAGTAGTCATACTCATGGGTTAGAGTCCCTAGAAATTATGTCTTGGAATCGAATCCAAAATACAGATGGACTTCTGAGTTCTGTCTCTCATCTAACCTCTTTGAGGAGTCTGACATTAATTCAATGTTTTCCCAACTCTGCAGAGTCGATCCCTTACTACGATCTTGGCCACTTAGCGTTATTGACCAAGTTGGATTTATCGGGAAACAAGTTTAAAAGAGTTCCGATAAGTATCCATCGACTCCCCAAACTTAGACAGCTGCGGCTACATAATTGCTCTGAATTGGAGGTTTTGCCAGATCTTCCATCAAGTCTAAGAGTATTACAAGCAAGTCGTTGTGATTCACTAGATGCATCCAATGTGAATGATGTCATATCAAATGCGTGTTGTGCCTTTGCAGAATCAGCTGCCCAAGATGGTGAAGACGTCTTTCAAATGGTGATCCCTGGGAAGGACATTCCAGCATGGTTTGAGCATCAGGAACAAGGTAACGGAATATCACTCTCATGCCCTTCAGCTAAAACCATGGCACTTTCTCTCTGTTTTGTATATGACGGTAAAGAGTATCAAGCGGAACATTCAGTGAGCTGCAATGGTAAAGAATTCATCAACCCGAGTTTATTAGAGGTGACGCACGGGATTTATTCTGGGAATATGTCCATTGTGTTCCTGAATGGTTACTATTTTAGTAACCTGTTAGGCCAACGCAATCACTTCCAAATCCTAATTCCCCATAATACTGATTATAATAATAATAGCGGTGTAACGAGATCTGCAGCACATTGGGTGTGTTACCAAGACATTCAAGATTTCAAGAAAAGAAAAGCAACTCTTGAAATGAGGGAGTAA 3216 0.3952 MASASSSTSIPPQPQPPTSYSHHVFLSFRGETRTRFISHLYAALQRKGIRTYKDDKNLRKGDLISHELLKAIEESMFAIIVFSPDYASSSWCLDEICKIIECKDKQGLQMVQVFYRVEPSDVRYQKGTFQKAFEEHKQKGRHDSEKVQRWRNALNKVTEHSGWTYKSEPDEAALVEKIAQGIFDFLIPKLPSSVKDLVGIKSRVEQVISKIGPELKDVRYIGIWGMGGIGKTTLARAVFETIRSKFEVVCFLANVREQCEKKDIVHVQKQLLDQMQIGSANVFSEYDGSTIIQDSLRLKKVLLVLDDVNHQKQLENLAGAQDWFGSGSRIIITTRDIHLLKGHEVEETYNVEGLVGSEAFNLFCSKAFKQSEPIEGFLDLSKEVVNYSGGLPLALKVLGSFLKGRPIAVWHSAIEKIKKSSHSEIIDVLRISYDGLDFMGKNIFLDIACFFKGYKKDYVTKILEGCGHDAEIGIDILINTSLVTLVKDKFGNVILEMHDLLEEMGKLIVIEESPNDVSKRSRVWSYKDVDFVVTQKKDFEATYGIRLDNFSSRDFDIRGSSFSKLQLLILDGVKAPILYNIPCTLKVLHWRACPMETLPFADHQHYELVKIDLHDSKIVRIWDGKKFLSKLQHLNLSHCNKLKQTPDLSGAPNLKTLYLEYCHQLNKIHPSLTDHKSLVELNLCGCSSLETLGDRLEMSSLKKLDIYNCTSLRRVPEFGECMNQLSMLTLDVGVIEELPSTFGNLVGLTELYLDVWNCIGRPISLGCFLCLKKLELKAYFGFACVPYDISSHTHGLESLEIMSWNRIQNTDGLLSSVSHLTSLRSLTLIQCFPNSAESIPYYDLGHLALLTKLDLSGNKFKRVPISIHRLPKLRQLRLHNCSELEVLPDLPSSLRVLQASRCDSLDASNVNDVISNACCAFAESAAQDGEDVFQMVIPGKDIPAWFEHQEQGNGISLSCPSAKTMALSLCFVYDGKEYQAEHSVSCNGKEFINPSLLEVTHGIYSGNMSIVFLNGYYFSNLLGQRNHFQILIPHNTDYNNNSGVTRSAAHWVCYQDIQDFKKRKATLEMRE 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272020g00004 1071 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 163 IPR035897 -
Stsc272020g00004 1071 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Stsc272020g00004 1071 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 187 - -
Stsc272020g00004 1071 SMART till_3 21 160 IPR000157 GO:0007165
Stsc272020g00004 1071 SUPERFAMILY "Winged helix" DNA-binding domain 423 530 IPR036390 -
Stsc272020g00004 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 447 IPR027417 -
Stsc272020g00004 1071 PRINTS Disease resistance protein signature 388 402 - -
Stsc272020g00004 1071 PRINTS Disease resistance protein signature 220 235 - -
Stsc272020g00004 1071 PRINTS Disease resistance protein signature 295 309 - -
Stsc272020g00004 1071 PRINTS Disease resistance protein signature 696 712 - -
Stsc272020g00004 1071 Gene3D - 354 437 IPR042197 -
Stsc272020g00004 1071 Gene3D Ribonuclease Inhibitor 717 918 IPR032675 -
Stsc272020g00004 1071 Pfam NB-ARC domain 203 428 IPR002182 GO:0043531
Stsc272020g00004 1071 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 718 IPR044974 GO:0006952
Stsc272020g00004 1071 Gene3D - 187 348 IPR027417 -
Stsc272020g00004 1071 Gene3D - 19 186 IPR035897 -
Stsc272020g00004 1071 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Stsc272020g00004 1071 SUPERFAMILY L domain-like 557 904 - -
Stsc272020g00004 1071 Gene3D Ribonuclease Inhibitor 550 716 IPR032675 -
Stsc272020g00004 1071 Pfam TIR domain 22 192 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272020g00004 Stsc-Chr272020 10096 34486 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272020g00004 12 835 WRKY Transcription Factor Family AT4G12020 28.538 3.33e-81 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272020g00004 - - adu:107485884 1189.1