Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00020 ATGCCAAATCCAGTGAATCTGAAGCCTCCAGATGGCACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTCTCTTTGAAAAGGGTTGGAAAGAGTTTGCTAAATTTTACACTTTGGATAATGGTCATTTGCTGTGGTTTGAGTATGATGGAACTTCTAACATCAAAGTACACATACTTGACATGAGTGGCCTAGAAATCGATTATCCTTCCAACGATCGAATCGTGGATGACGACGTGGTTGATATTTTGGATGAACCACCACGAAGACGCCGAGGCCGGCCAAGGAAAAAAGTGAAAGCAGAACAACCAAAGCAATCATGTCCTTCTAAAAGTAAAGTATCCAAAAGTGCCATAAAAACTGAAGTAGTTGTGGAGAGAAACCTCAATGAACAAAACTTGAAGCAGCATGTCAAGAATGAAGAAGATATTCAATCTGAAGAGACAGCAGAGTTTAAGCTTCCAATAATTCAATGCTGCAAACCAGATATAGATGGTCTGTGTTTCATGATCTAA 522 0.3927 MPNPVNLKPPDGTQWKIDWTNHDGEILFEKGWKEFAKFYTLDNGHLLWFEYDGTSNIKVHILDMSGLEIDYPSNDRIVDDDVVDILDEPPRRRRGRPRKKVKAEQPKQSCPSKSKVSKSAIKTEVVVERNLNEQNLKQHVKNEEDIQSEETAEFKLPIIQCCKPDIDGLCFMI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00020 173 MobiDBLite consensus disorder prediction 88 120 - -
Stsc272017g00020 173 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
Stsc272017g00020 173 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Stsc272017g00020 173 PANTHER B3 DOMAIN-CONTAINING 1 150 - -
Stsc272017g00020 173 Gene3D - 1 66 IPR015300 -
Stsc272017g00020 173 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00020 Stsc-Chr272017 86768 87910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00020 1 88 B3 DNA Binding Superfamily AT1G49475 38.636 5.57e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00020 B3 2.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00020 - - ahf:114924514 228.024