Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00019 ATGCCAAATCCAGTGAATCTGAAGCCTCCAGATGGCACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTCTCTTTGAAAAGGGTTGGAAAGAGTTTGCTAAATTTTACACTTTGGATAATGGTCATTTGCTGTGGTTTGAGTATGATGGAACTTCTAACATCAAAGTACACATACTTGACATGAGTGGCCTAGAAATCGATTATCCTTCCAACGATCGAATCGTGGATGACGACGTGGTTGATATTTTGGATGAACCACCACGAAGACGCCGAGGCCGGCCAAGGAAAAAAGTGAAAGCAGAACAACCAAAGCAATCATGTCCTTCTAAAAGTAAAGTATCCAAAAGTGCCATAAAAACTGAAGTAGTTGTGGAGAGAAACCTCAATGAACAAAACTTGAAGCAGCATGTCAAGAATGAAGAAGATATTCAATCTGAAGAGACAGCAGAGTTTAAGCTTCCAATAATTCAATGCTGCAAACCAGATATAGATGTTGTTAGAGAAGCAAGGAAGTTCAAGTCAAAAAATCCTTCTTTCATAATCAAGATTAAGCAAATTCACCAAACAGGATCACCAGCAAGTTTTCCAGTTAGCTTCTTCAGATTGTACTTCGAGAATTCGAAGCAGCTTGCAAGTCTAAGTGTTGGAAAGAAGCAGTGGCCTGTAACATTAATCCATTATCCATGTTCAAAAAGAGCCCTTATCTCGTGCTTGCGCTTGTTCATCAGAGAAAATAACTTAAAAGCCGGAGATGTTTGTGTCTTTGAGCTCATTAACAGAGAATATCCTGAGCTTAAGGTTCATATTCGTCGAAGCCACGAATTAGCAAATTTCAGAAGCTCTTGA 855 0.3906 MPNPVNLKPPDGTQWKIDWTNHDGEILFEKGWKEFAKFYTLDNGHLLWFEYDGTSNIKVHILDMSGLEIDYPSNDRIVDDDVVDILDEPPRRRRGRPRKKVKAEQPKQSCPSKSKVSKSAIKTEVVVERNLNEQNLKQHVKNEEDIQSEETAEFKLPIIQCCKPDIDVVREARKFKSKNPSFIIKIKQIHQTGSPASFPVSFFRLYFENSKQLASLSVGKKQWPVTLIHYPCSKRALISCLRLFIRENNLKAGDVCVFELINREYPELKVHIRRSHELANFRSS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00019 284 Gene3D - 165 278 IPR015300 -
Stsc272017g00019 284 PANTHER B3 DOMAIN-CONTAINING 1 264 - -
Stsc272017g00019 284 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Stsc272017g00019 284 Pfam B3 DNA binding domain 5 63 IPR003340 GO:0003677
Stsc272017g00019 284 Pfam B3 DNA binding domain 197 275 IPR003340 GO:0003677
Stsc272017g00019 284 MobiDBLite consensus disorder prediction 88 119 - -
Stsc272017g00019 284 Gene3D - 1 66 IPR015300 -
Stsc272017g00019 284 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Stsc272017g00019 284 SMART B3_2 182 276 IPR003340 GO:0003677
Stsc272017g00019 284 CDD B3_DNA 197 274 IPR003340 GO:0003677
Stsc272017g00019 284 SUPERFAMILY DNA-binding pseudobarrel domain 175 275 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00019 Stsc-Chr272017 85997 87910 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00019 5 278 B3 DNA Binding Superfamily AT3G18990 23.810 3.11e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00019 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00019 - - aip:107621185 392.504