Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00018 ATGCCAACAATTCAAAGTGCCAGAGTTGATATGGATACAAAGAAGTTCAAGTCAGAGAATCCCTCTTTCATAATCAAGATAAGCCAAACTGAACTAACTAGAGCTGCAACAAGCATTCCAGCTGCCTTCTTCAGAGAACACTTTAAGAAAGAAAAGGAGCATCTAAATCTATGCAGTGGAGAGAAGCAGTGGCCTACAACACTGATCTATTATCCAGTTAAGAAAAGCGCCGTCTTGTCCTCTGGTTGGCGCTTGTTCGTTGAAGAAAGTAAGCTGAAAGCTGGAGATGTTTGTGTCTTTGAGCTTGTTTACAGAGAAGGCGCGGAACTTCATGCTCATATTTTTCGAGGGGATGATTGTGAAGAAAAAATAAAAGGGAAAACTGCAGAAGTTGTAGAGAAGAGAAGAACAAGAAATTGA 420 0.4048 MPTIQSARVDMDTKKFKSENPSFIIKISQTELTRAATSIPAAFFREHFKKEKEHLNLCSGEKQWPTTLIYYPVKKSAVLSSGWRLFVEESKLKAGDVCVFELVYREGAELHAHIFRGDDCEEKIKGKTAEVVEKRRTRN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00018 139 CDD B3_DNA 21 116 IPR003340 GO:0003677
Stsc272017g00018 139 Pfam B3 DNA binding domain 28 117 IPR003340 GO:0003677
Stsc272017g00018 139 SUPERFAMILY DNA-binding pseudobarrel domain 16 120 IPR015300 -
Stsc272017g00018 139 SMART B3_2 23 118 IPR003340 GO:0003677
Stsc272017g00018 139 Gene3D - 3 119 IPR015300 -
Stsc272017g00018 139 ProSiteProfiles B3 DNA-binding domain profile. 22 118 IPR003340 GO:0003677
Stsc272017g00018 139 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 121 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00018 Stsc-Chr272017 84925 85979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00018 14 116 REM Transcription Factor Family AT1G49480 32.692 7.82e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00018 B3 2.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00018 - - aip:107622451 134.42