Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00017 ATGGTTATGGCTTCCTCTAGCTTCCAACAAAACAAGCATTCTCCTTCCAAGTCCAATGTCATCCGTTTCTTCAAGATTATTATCAGAAAAGCTCTTCAAGATGGAAACCTTAAGTTACCAAACAAGTTCACTAACAAATATGGTTCTGGCCTACCAAATCCATTGTATCTTAAGCCTCCAGATGGCACTGAATGGAAAGTAGATTGGACTAATCATGATGATGGAATTCTGCTTGAAAAGGGTTGGAAAGAGTTTGCTGCATATTACTCTCTTGATAATGGCCATTTGCTGTGCTTTGAGTATAATAATGGAACTTCTCACATTGAAGTACACATACTTGACATGAGTGGCCTCGAAATAGACTATCCTGCGGTTCCTGCCGACGACAAGATCAAAGAGCAGCTGCCACGACGAAGGGGCCGGCCACGGAAAAGTCCGAAAGAACCAATTCCATTATCCCCTTCTACAAGTAAACAATTGAGAAGTGCCATAACAACTATAGATGTGGATAGCAGTCCCAACACTCAAAACATTATTAGACTTAATGAGGGACAGCAGAGGAAAAGATTGAATGAACCACTGCCAAGAGTCCGGGGCCGACCGAGGAAAAAGCCGAAAGCACCAATGTCATCTCCTTTTAACAGTACACAGTTAGAAAATGACACACAAATCAGAGATGTGGAAAGAAGCCTCAATCCACAAAGTATTGAATCTGAAAAGACAAACCTTGAGATGGCAGTGTCTTTTAATCAAGATTCTAATGGCGAAAAGAATAGAAGAAGACAAGACTCTAAATCTTCTGTTAGGCCCGGACCTGCAAGATCTGAACCTCTCAAAGAAGCTAAGAAATTCAAGTGGGAAAGTCCCTCTTTCATCATCAAGATAACGCATCGGAATAAATCGAGTTCACAGTCTTGCTTTTCAGTTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAAAGCAAACATAAGGTTTCAAAAGGAGGTGTTCCCTGCAAAGTTGTTGTATAGGCCATCAACTTCGAATGCCTATATCTCTACTGGTTGGAGAGATTTTGCTAAAGCTAGTAAATTACAAGCCGGAGATGTTTGTCTATTTAAGCTCATCAATACTAAAGATCCAGAGCTTGAAGTTCATATTTGTCGTCGACTAGGCCGAGAGTCACAGCTCCTGGAAAAAGCTAAGGAGCTCAACTCAGAAAATCCTTATTTAATGGTCAAGATAAAGAACAGTAATCCAAGGAGCTCAAGGCCTAGCTTATCAGGTGTCTTCTACAGAAGGTATTTTAAACAGAATCAGCAGAATGTAAAGTTAAGGTTTGGAAAGAAGTTGTTGCCTGCTAAGTTCATCTACAACCCTTTATCAAGAAATGCTGTTTTTTCGAAAGGTTGGCATGCTTTTGCTCAAGCAAATGAATTGGAAGCTGGAGATGTTTGTTTCTTGGAGCTCATTAATGGAAAAGATCTGCTAGATGTTCATATCTGTAGAGCCCATTACTGCAAATCTATTATATAA 1521 0.3964 MVMASSSFQQNKHSPSKSNVIRFFKIIIRKALQDGNLKLPNKFTNKYGSGLPNPLYLKPPDGTEWKVDWTNHDDGILLEKGWKEFAAYYSLDNGHLLCFEYNNGTSHIEVHILDMSGLEIDYPAVPADDKIKEQLPRRRGRPRKSPKEPIPLSPSTSKQLRSAITTIDVDSSPNTQNIIRLNEGQQRKRLNEPLPRVRGRPRKKPKAPMSSPFNSTQLENDTQIRDVERSLNPQSIESEKTNLEMAVSFNQDSNGEKNRRRQDSKSSVRPGPARSEPLKEAKKFKWESPSFIIKITHRNKSSSQSCFSVKFFRKYFENNPQKANIRFQKEVFPAKLLYRPSTSNAYISTGWRDFAKASKLQAGDVCLFKLINTKDPELEVHICRRLGRESQLLEKAKELNSENPYLMVKIKNSNPRSSRPSLSGVFYRRYFKQNQQNVKLRFGKKLLPAKFIYNPLSRNAVFSKGWHAFAQANELEAGDVCFLELINGKDLLDVHICRAHYCKSII 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00017 506 CDD B3_DNA 22 114 IPR003340 GO:0003677
Stsc272017g00017 506 SUPERFAMILY DNA-binding pseudobarrel domain 399 502 IPR015300 -
Stsc272017g00017 506 CDD B3_DNA 404 498 IPR003340 GO:0003677
Stsc272017g00017 506 CDD B3_DNA 289 384 IPR003340 GO:0003677
Stsc272017g00017 506 Gene3D - 273 386 IPR015300 -
Stsc272017g00017 506 Gene3D - 387 501 IPR015300 -
Stsc272017g00017 506 Gene3D - 16 117 IPR015300 -
Stsc272017g00017 506 ProSiteProfiles B3 DNA-binding domain profile. 462 500 IPR003340 GO:0003677
Stsc272017g00017 506 MobiDBLite consensus disorder prediction 249 280 - -
Stsc272017g00017 506 ProSiteProfiles B3 DNA-binding domain profile. 22 116 IPR003340 GO:0003677
Stsc272017g00017 506 SUPERFAMILY DNA-binding pseudobarrel domain 17 116 IPR015300 -
Stsc272017g00017 506 MobiDBLite consensus disorder prediction 150 184 - -
Stsc272017g00017 506 MobiDBLite consensus disorder prediction 209 223 - -
Stsc272017g00017 506 SMART B3_2 407 500 IPR003340 GO:0003677
Stsc272017g00017 506 SMART B3_2 291 386 IPR003340 GO:0003677
Stsc272017g00017 506 SMART B3_2 23 116 IPR003340 GO:0003677
Stsc272017g00017 506 SUPERFAMILY DNA-binding pseudobarrel domain 285 384 IPR015300 -
Stsc272017g00017 506 Pfam B3 DNA binding domain 408 499 IPR003340 GO:0003677
Stsc272017g00017 506 Pfam B3 DNA binding domain 293 385 IPR003340 GO:0003677
Stsc272017g00017 506 Pfam B3 DNA binding domain 24 114 IPR003340 GO:0003677
Stsc272017g00017 506 MobiDBLite consensus disorder prediction 129 223 - -
Stsc272017g00017 506 ProSiteProfiles B3 DNA-binding domain profile. 335 386 IPR003340 GO:0003677
Stsc272017g00017 506 PANTHER B3 DOMAIN-CONTAINING 403 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00017 Stsc-Chr272017 81719 84465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00017 393 492 B3 DNA Binding Superfamily AT3G18990 28.713 1.27e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00017 B3 3.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00017 - - adu:107471893 596.66