Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00014 ATGGCTTCACGTAGCTACCAACCAAACAAGCATTCTCCTCCTCCAACATTGATCCGTTTCTTTAAGATTATTCTCAGACAGAACCTTCAACATGGAAATCTTAAGATACCAAGCAAGTTCACTAGCAAATATGGTGGTGACGTGAAAAATCCAGTGTATCTGAAGCCTCCAGATGGAACTCAATGGAAAGTACATTGGACTCAGCATGATGGTGAGATTTTATTTGAAAATGGTTGGAAAGAGTTTGCTGAGTATTATTCTCTGGATCATGGCCACTTGTTGAGGTTTGAGTACAATGGAACTTCTTGTTTTGAGGTACACATATTTGACATGAGTGGTCTTGAAATACACTATCCTTTCAATAACCGGATCGATGATGATTCGGTTGAGATTTTGAATGAGCCACCACTACAATGTTGGGGCCAACAGAGGAAAAAATTGAAAACACCATTATCATTATCATTGCCTTCTACAAGTAAGCAATTGAGAATTGTCACAGAAACTAGAGATGAGGACGGAGGTAGTCAATCTGAAGAGAAAAACACTGAGATGCCAGTAATTCCATCTGTTGGTCGTCGTTCGGATGTTTTTGAGCCTGGGACCTGTGGTTTTCGATGTCTGGAAGAGGCCCAAAAGTTCAATTCAGAAAATCCATCTTTCATAATCAAGCTGCGGAAAATTAATCTACAGCGATCAAGGACTAATTTTAAAGCTTCCTTCTACAGAAAGTATTTTGAAAACAAGGAGCAGGCTGTAGAGATACGGTATGGAGGCAAGTTGTGGCCTGCAAAGTTGCTCTATTATCCTGTGACGGCTGCCTATATCTCCAATGGTTGGCGGCCTTTTAGACTTGACAATGATTTAAAAGTTGGAGATGTATGTGTCTTTGAGCTCATCATTAATGGAGAAAATCCAGTGCTTGATGCTCATATTTATAGAGCCAATGATTATGCAATCCATTAG 963 0.3988 MASRSYQPNKHSPPPTLIRFFKIILRQNLQHGNLKIPSKFTSKYGGDVKNPVYLKPPDGTQWKVHWTQHDGEILFENGWKEFAEYYSLDHGHLLRFEYNGTSCFEVHIFDMSGLEIHYPFNNRIDDDSVEILNEPPLQCWGQQRKKLKTPLSLSLPSTSKQLRIVTETRDEDGGSQSEEKNTEMPVIPSVGRRSDVFEPGTCGFRCLEEAQKFNSENPSFIIKLRKINLQRSRTNFKASFYRKYFENKEQAVEIRYGGKLWPAKLLYYPVTAAYISNGWRPFRLDNDLKVGDVCVFELIINGENPVLDAHIYRANDYAIH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00014 320 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Stsc272017g00014 320 PANTHER B3 DOMAIN-CONTAINING 17 301 - -
Stsc272017g00014 320 ProSiteProfiles B3 DNA-binding domain profile. 219 315 IPR003340 GO:0003677
Stsc272017g00014 320 SUPERFAMILY DNA-binding pseudobarrel domain 213 315 IPR015300 -
Stsc272017g00014 320 Gene3D - 16 113 IPR015300 -
Stsc272017g00014 320 Pfam B3 DNA binding domain 22 110 IPR003340 GO:0003677
Stsc272017g00014 320 Pfam B3 DNA binding domain 233 308 IPR003340 GO:0003677
Stsc272017g00014 320 CDD B3_DNA 19 110 IPR003340 GO:0003677
Stsc272017g00014 320 SMART B3_2 220 315 IPR003340 GO:0003677
Stsc272017g00014 320 SMART B3_2 20 112 IPR003340 GO:0003677
Stsc272017g00014 320 Gene3D - 204 318 IPR015300 -
Stsc272017g00014 320 SUPERFAMILY DNA-binding pseudobarrel domain 14 112 IPR015300 -
Stsc272017g00014 320 CDD B3_DNA 218 313 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00014 Stsc-Chr272017 72555 74069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00014 20 316 B3 DNA Binding Superfamily AT3G18990 28.402 4.33e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00014 B3 1.8e-09 CL0405