Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00013 ATGGCTTCCTCCAGCTTTCAACCAAAGAACCAGTCTCCTTTCACTGTGATCCGTTTCTTTAAGATTGTTCTCAGTAAAAGTCTCCAAGCTGGAACTCTTAAGATACCAAGAAAGTTCAGTCGGAAATATGGTGGTGATGTGCCGAATCCAGTGTATCTAAAGCCTCCGGACGGCATTCAATGGAAAATAGATTGGAGTAATCATGATGGTGAGATTTTGTTTGAAACTGGTTGGAAAGAGTTTGCTGCATATTACTCTCTACATGATGGACACTTGTTGTGGTTTGAGTTTAAAGAAACTTCTCTTTTTGAGGTACACATATTTGACACGAGTGGCCTTGAAATAGACTATCCTCTCAATGATCAAACTTATGATGATTTTGATGAGATTTTGAATAAGCCCCCGCCACGACCGAGGAAACGGTCGAAAGCAGCATTATTGTCTCCTTCTACAACGAGACAATTGAGAAGTGCCACAAAAACTACAGATGTTGAAAGAGGTAGTCTATTGGAGGAGACTAACCTTGAAATGCCGGTAGTTTCATCTCCCCAACAAGATTTCTTTGAATTCTATCCTGGAACCAGGGGGTTTAAGGCTCTGAAAGAAGCTCAGAAGTTCAGCTCAGAAAATCCCTTTTTCATTGTCAAGATAAGGCAAACTATACGTACAAGTGCTAATTTCGCAGCTTCCTTTTTCACAAAATATTTCAAAAATGAGCAGCAGAAAGTAAAGATAAGGTTTGAGGGGAGGTTGTTTCCTGCAAAGTTGTGCTACTATCGAGATGCTTCTCATGCCCTTATCTCTGCCGGTTGGCGCCGTTTTGCTCGAGCAAGTAAATTACAACCTGGGGATGTTATTCTGTTTGAGCTCGTCGATAGAGATGATCCGGTGTTTGAAACTCATATTTATAGAGCCCAAGCTTTCAAGTCTTGGGCCGGTGGGTTTCAGTCTCTGAAAGCAATACAGAATTTCAAGTCAGAAAATCCCTCTTTCATGATCAAGATATCAAATCCTAGTGTATTGAAAAAACATGCTGCCATACCAATTCCCTTCTTCACAAAGTATTTTGCGAAGAAGAAGGTGAATATAAACATAAGGATGGGAAGCAAGTTGCTGCCAGTGAAGTTGCTCTATTATCCATCATTTTCTAATGCTTATATCTCTGCCGGTTGGAAAGCTTTCGTTGTTGCCAGTAATTTAAAAGTTGGAGATGTTTGTATCTTTGAGCTCATAAATGAAAAAGATCAAGTGCTCGATGTTCATATTTATCGAGCCGGTGAAGAACTTCAGGAGCTCTTTAACTAA 1305 0.4015 MASSSFQPKNQSPFTVIRFFKIVLSKSLQAGTLKIPRKFSRKYGGDVPNPVYLKPPDGIQWKIDWSNHDGEILFETGWKEFAAYYSLHDGHLLWFEFKETSLFEVHIFDTSGLEIDYPLNDQTYDDFDEILNKPPPRPRKRSKAALLSPSTTRQLRSATKTTDVERGSLLEETNLEMPVVSSPQQDFFEFYPGTRGFKALKEAQKFSSENPFFIVKIRQTIRTSANFAASFFTKYFKNEQQKVKIRFEGRLFPAKLCYYRDASHALISAGWRRFARASKLQPGDVILFELVDRDDPVFETHIYRAQAFKSWAGGFQSLKAIQNFKSENPSFMIKISNPSVLKKHAAIPIPFFTKYFAKKKVNINIRMGSKLLPVKLLYYPSFSNAYISAGWKAFVVASNLKVGDVCIFELINEKDQVLDVHIYRAGEELQELFN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00013 434 CDD B3_DNA 329 424 IPR003340 GO:0003677
Stsc272017g00013 434 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc272017g00013 434 ProSiteProfiles B3 DNA-binding domain profile. 248 306 IPR003340 GO:0003677
Stsc272017g00013 434 MobiDBLite consensus disorder prediction 131 160 - -
Stsc272017g00013 434 Pfam B3 DNA binding domain 19 110 IPR003340 GO:0003677
Stsc272017g00013 434 Pfam B3 DNA binding domain 230 305 IPR003340 GO:0003677
Stsc272017g00013 434 Pfam B3 DNA binding domain 332 425 IPR003340 GO:0003677
Stsc272017g00013 434 Gene3D - 195 308 IPR015300 -
Stsc272017g00013 434 Gene3D - 315 428 IPR015300 -
Stsc272017g00013 434 CDD B3_DNA 232 304 IPR003340 GO:0003677
Stsc272017g00013 434 ProSiteProfiles B3 DNA-binding domain profile. 330 426 IPR003340 GO:0003677
Stsc272017g00013 434 SMART B3_2 331 426 IPR003340 GO:0003677
Stsc272017g00013 434 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc272017g00013 434 SMART B3_2 212 306 IPR003340 GO:0003677
Stsc272017g00013 434 SUPERFAMILY DNA-binding pseudobarrel domain 16 111 IPR015300 -
Stsc272017g00013 434 SUPERFAMILY DNA-binding pseudobarrel domain 206 305 IPR015300 -
Stsc272017g00013 434 Gene3D - 15 112 IPR015300 -
Stsc272017g00013 434 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc272017g00013 434 MobiDBLite consensus disorder prediction 145 160 - -
Stsc272017g00013 434 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 320 428 IPR044837 -
Stsc272017g00013 434 SUPERFAMILY DNA-binding pseudobarrel domain 324 425 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00013 Stsc-Chr272017 69582 71776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00013 316 431 B3 DNA Binding Superfamily AT3G18990 32.203 1.01e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00013 B3 1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00013 - - adu:107471605 421.009