Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00011 ATGAATATACCAGAGAAGTTCAGTAAGAAATATGGTGATAGTTTCCCAAATCCAGTGTATCTCAAGCCTCCAGATGGCACTGAATGGAAAATCAATTGGACTAACCAAGATGGTGAAATTCTGTTTGAGAAGGGTTGGAATGAGCTTGCAAAATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTACAATGGAACTTCCGAAATTGAAGTACACATACTCGACACGAGTTGCCTTGAAATAGACTATCCTTCCAATGACAACTCGGTTGGGATCTCGAAGAAACAAAAGGAAAAAGTGTAA 309 0.3883 MNIPEKFSKKYGDSFPNPVYLKPPDGTEWKINWTNQDGEILFEKGWNELAKYYSLDNGHLLWFEYNGTSEIEVHILDTSCLEIDYPSNDNSVGISKKQKEKV 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00011 102 SMART B3_2 1 79 IPR003340 GO:0003677
Stsc272017g00011 102 PANTHER B3 DOMAIN-CONTAINING 3 93 - -
Stsc272017g00011 102 CDD B3_DNA 1 77 IPR003340 GO:0003677
Stsc272017g00011 102 Gene3D - 1 80 IPR015300 -
Stsc272017g00011 102 SUPERFAMILY DNA-binding pseudobarrel domain 1 86 IPR015300 -
Stsc272017g00011 102 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Stsc272017g00011 102 Pfam B3 DNA binding domain 2 77 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00011 Stsc-Chr272017 67731 68112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00011 1 90 B3 DNA Binding Superfamily AT1G49475 38.889 1.14e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00011 B3 2.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00011 - - adu:107471605 158.303