Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00010 ATGGCTTCCTCTAGCTTCCAACCAAAGAACCAGTCTCCTCCCACTGTGATCCGTTTCTTTAAGATTGTTCTCAGTAAAACTCTCCAAGCTGGAACTCTTAAGATACCAGGAAAGTTCAGTAGGAAACATGGTGGTGATGTGCCGAATCCAGTGTATCTCAAGCCTCCAGATGGCACAAAATGGAAAATAGATTGGAGTGATCATGATGGTGAGATTTTGTTTGAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTACTTGATGGCCACTTGTTGTGGTTTGAATTTAAAGAAAGTGCTCTTTTTGAGGTACACATATTTGACACGAGTGGCCTTGAAATAGACTATCCTCTCAATGATCAGACTGATGAAGATTTTGATGATGATTTTGTTGAGAATTTGAATAAGCCCCCACCACGACCGAGGAAAAGGTCGAAAGCAGCATTCTTGTCTCCTTCTACAACAAGACAATTGGGAAGTGCCACAAAAACTAGAGATGTTGAAAGAGGTAGTCAATCTGAGGAGACTAACCTTGAAATACCGGTATTTTCATCTGCCAAGCAAGATTTCTTTGAATTCTATCCTGGAACCGGGGGGTTTATGGCTTTGAAAGAAGCTCAGAAGTTCAGCTCAGAAAATCCCTTTTTCATTGTCAAGATAAGGCAAGCTAGACGTTCAAATGCTAATTTGCCAGCTTCCTTTTTCAAAAAGTATTTCAAAAAGTATTTTCAGAAAGTAAAGTTAAGGTTTGAGGGGAAGTTGTTTCCCGCAAAGTTGTCCTACTATCGAGATACTTCGCATGCCCTTATCTCTGCCGGTTGGCGCCGTTTTGCTCGAGAAAGTAAATTACAACCTGGGGATGTTATTCTGTTTGAGCTCGTCGATAGAGATGATCCGGTGTTTGAAACTCATATTTATAGAGCACAAGCTTTCAAGTCTCGGTCTGGCGGGTTTGAGTCTCTGAAAGCAGCTCAGAATTTCAAGTCAAAAAATCCCTCTTTCATGGTCAAGATATCAAATCCTAGCATATTGAAAACAACTGCTGCCATACCAATTCCCTTCTTCACAAAGTATTTTGCGAAGAAGAAGAAGGTGAATATAAACATAAGGATGGGAAGCAAGTTGCTGCCAGTGAGGTTGCTCTATTATCCATCATTTGGTAATGCTTATATCTCTGCCGGTTGGAAAGCTTTTCTTGTTGCCTGTAATTTAAAAGCTGGAGATGTCTGTATCTTTGAGCTCATAAATGAAAAAGATCAAGTGCTCGATGTTCATATTTATCGAGCCGGTGAAGAATTTCAGGAGCTCTTTATTACAACATCTACGATGGATATAGACTATCCTCTCAATGATGGGACTGATGATGATTTTGATGCTATTTCGAATAAGCCCCCACCACGACCGAGGAAACGGTCGAAAGCAGCATTATTGTCTCCTTCTACAACAAGACAATTGAGAAGTGACACAAAAACTAGAGACGTTGAAAGAGGTAGTCAATCTGAGGAGACTAACCTTGAAATACCGGTATTTTCATCAGCCAGCCAAGATTTCTTTGATTTCTATCCAGGAACCGGGGGGTTTCAGGCTCTGAAAGAAGCTCAGAAGTTCAGCTCAGACAATCCCTTTATTATTGTCAAGATAAGGCAAACTATACGTACAACTGCTAATTTTCCAGCTTCCTTTTTCACAAAATATTTCAAAAATGAGCAGCAGAAAGTAAAGATAAGGTTTGAGGGGAGGTTGTTTCCTGCAAAGTTGTGCTACTATCGAGATTGTTATACTGCCATTATCTCTGCCGGTTGGCCCCGTTTTGTTCAAGCAAGTAAATTACAACCTGGGGATGTTATTCTGTTTGAGCTCGTCGATAAAGATGATCCGGTTCTCGAAGCTCATCTATATAGAGCCCAAGCTTTCAAGTCTCAGTCCGGCGGGTTTCAGTCTCTGAAGGCAGCTCAGAATTTCAAGTCAGAAAATCCCTCTTTCATGATCAAGATAACAAGTCCTATTGTATTGAAAAAAGCTGGTGCCATACCATTTCCCTTCTTCACAAAGTATTTTGCAAAGAAGAAGATGAACATAAACATAAGGATGGGAAGCAAGTTGCTGCCAGTGAAGTTGCGTTGTTATCCATCATTACGTGCTGCTTATATCTCCGCCGGTTGGAACGCTTTTGTTGTTGCCAGTAATTTAAAAGTTGGAGATGTCTGTATCTTTGAGCTCATAAATGAAAAAGATCAAGTGCTCGATGTTCATATTTATCGAGCCGGTGAAGAACTTCAGGAGCTCTTTAACTAA 2298 0.4051 MASSSFQPKNQSPPTVIRFFKIVLSKTLQAGTLKIPGKFSRKHGGDVPNPVYLKPPDGTKWKIDWSDHDGEILFENGWKEFAAYYSLLDGHLLWFEFKESALFEVHIFDTSGLEIDYPLNDQTDEDFDDDFVENLNKPPPRPRKRSKAAFLSPSTTRQLGSATKTRDVERGSQSEETNLEIPVFSSAKQDFFEFYPGTGGFMALKEAQKFSSENPFFIVKIRQARRSNANLPASFFKKYFKKYFQKVKLRFEGKLFPAKLSYYRDTSHALISAGWRRFARESKLQPGDVILFELVDRDDPVFETHIYRAQAFKSRSGGFESLKAAQNFKSKNPSFMVKISNPSILKTTAAIPIPFFTKYFAKKKKVNINIRMGSKLLPVRLLYYPSFGNAYISAGWKAFLVACNLKAGDVCIFELINEKDQVLDVHIYRAGEEFQELFITTSTMDIDYPLNDGTDDDFDAISNKPPPRPRKRSKAALLSPSTTRQLRSDTKTRDVERGSQSEETNLEIPVFSSASQDFFDFYPGTGGFQALKEAQKFSSDNPFIIVKIRQTIRTTANFPASFFTKYFKNEQQKVKIRFEGRLFPAKLCYYRDCYTAIISAGWPRFVQASKLQPGDVILFELVDKDDPVLEAHLYRAQAFKSQSGGFQSLKAAQNFKSENPSFMIKITSPIVLKKAGAIPFPFFTKYFAKKKMNINIRMGSKLLPVKLRCYPSLRAAYISAGWNAFVVASNLKVGDVCIFELINEKDQVLDVHIYRAGEELQELFN 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00010 765 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc272017g00010 765 ProSiteProfiles B3 DNA-binding domain profile. 541 637 IPR003340 GO:0003677
Stsc272017g00010 765 Gene3D - 15 112 IPR015300 -
Stsc272017g00010 765 MobiDBLite consensus disorder prediction 149 167 - -
Stsc272017g00010 765 SUPERFAMILY DNA-binding pseudobarrel domain 210 309 IPR015300 -
Stsc272017g00010 765 CDD B3_DNA 245 308 IPR003340 GO:0003677
Stsc272017g00010 765 MobiDBLite consensus disorder prediction 487 501 - -
Stsc272017g00010 765 SUPERFAMILY DNA-binding pseudobarrel domain 655 756 IPR015300 -
Stsc272017g00010 765 SUPERFAMILY DNA-binding pseudobarrel domain 328 430 IPR015300 -
Stsc272017g00010 765 ProSiteProfiles B3 DNA-binding domain profile. 334 431 IPR003340 GO:0003677
Stsc272017g00010 765 CDD B3_DNA 660 755 IPR003340 GO:0003677
Stsc272017g00010 765 SMART B3_2 217 310 IPR003340 GO:0003677
Stsc272017g00010 765 SMART B3_2 335 431 IPR003340 GO:0003677
Stsc272017g00010 765 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc272017g00010 765 SMART B3_2 548 637 IPR003340 GO:0003677
Stsc272017g00010 765 SMART B3_2 662 757 IPR003340 GO:0003677
Stsc272017g00010 765 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 650 759 IPR044837 -
Stsc272017g00010 765 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Stsc272017g00010 765 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc272017g00010 765 Pfam B3 DNA binding domain 226 309 IPR003340 GO:0003677
Stsc272017g00010 765 Pfam B3 DNA binding domain 340 430 IPR003340 GO:0003677
Stsc272017g00010 765 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Stsc272017g00010 765 Pfam B3 DNA binding domain 558 635 IPR003340 GO:0003677
Stsc272017g00010 765 Pfam B3 DNA binding domain 669 756 IPR003340 GO:0003677
Stsc272017g00010 765 CDD B3_DNA 558 625 IPR003340 GO:0003677
Stsc272017g00010 765 ProSiteProfiles B3 DNA-binding domain profile. 214 310 IPR003340 GO:0003677
Stsc272017g00010 765 ProSiteProfiles B3 DNA-binding domain profile. 661 757 IPR003340 GO:0003677
Stsc272017g00010 765 MobiDBLite consensus disorder prediction 457 503 - -
Stsc272017g00010 765 MobiDBLite consensus disorder prediction 128 176 - -
Stsc272017g00010 765 SUPERFAMILY DNA-binding pseudobarrel domain 537 634 IPR015300 -
Stsc272017g00010 765 CDD B3_DNA 333 429 IPR003340 GO:0003677
Stsc272017g00010 765 Gene3D - 319 433 IPR015300 -
Stsc272017g00010 765 Gene3D - 528 639 IPR015300 -
Stsc272017g00010 765 Gene3D - 201 312 IPR015300 -
Stsc272017g00010 765 Gene3D - 645 758 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00010 Stsc-Chr272017 54437 66089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00010 625 762 B3 DNA Binding Superfamily AT3G18990 29.167 4.74e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00010 B3 1.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00010 - - adu:107471605 402.905