Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00009 ATGGCTTCCTCTGCCTCCCAACAAAACAACCATTCTGCTTCAACTGTTATCCGTTTCTTAAAGATTGTTCTCAAGAAAAGCCTTCAAGATGGAACTCTTAAGGTACCAAAGAAGTTCAGTAAGAAATATGGTGATGGTTTGCCGAATCCAGTGTATATCAAGCCTCCGGATGGCACTGAATGGAAGATAGATTGGACTAAGCAAGATGGTGAAGTTCTGTTTGAGAAGGGTTGGAAGGAGTTTGCAAAATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTACAATGGAACTTCCGAAATTGAAGTACACATACTTGACCCGAGTTGCCTTGAAATAGACTATCCTCCCAATGACAACTTGGTTGGGATGTCGAAGAAACAGCAACGGCAAAAGAGAAAAGTGAAAGCAGAACCAAAGCCATCAACTCCTTCTAGAAGTAAAAGATTGAAACGTACCGCCAAAACTGCGGATGAGGAAGGAAGCCCTGATACACTAAACTGGAAGCAAAATGCCAATAGTGAAGAAGAGACAAAGCTTAAGATTCCGGCAAGACGACGTAAAAGGCCATATGTGGATGCTTTCAAGTTTCGGTCAGATGGGTTTCGGTCTCTGAAAGCAGCTCAGAATTTCAAGTCAGAAAATCCCTCTTTCATGATTCAAATAACACATCCAAGTATATTGAAGAAAGCTGCTGCCATACCAATTCCCTTCTTCACAAAATATTTTGCGAAGAAGAAGCTGAATATGAATATAAACATAAGGATGGGAAGCAAGTTGCTGCCGGTGAAGTTGCTCTATTATCCATCATTTCGTGCTGCTTATATCTCCGCCGGTTGGCAGACTTTTGCTGTTGCCAGTAATTTAAAAGCTGGAGATGTTTGTATCTTTGAGCTTCCAAATGAACAAGATCAATTGCTCGATGTTCATATTTATCGAGCTGGCCGTTTGTCAATCCTTTAG 969 0.4107 MASSASQQNNHSASTVIRFLKIVLKKSLQDGTLKVPKKFSKKYGDGLPNPVYIKPPDGTEWKIDWTKQDGEVLFEKGWKEFAKYYSLDNGHLLWFEYNGTSEIEVHILDPSCLEIDYPPNDNLVGMSKKQQRQKRKVKAEPKPSTPSRSKRLKRTAKTADEEGSPDTLNWKQNANSEEETKLKIPARRRKRPYVDAFKFRSDGFRSLKAAQNFKSENPSFMIQITHPSILKKAAAIPIPFFTKYFAKKKLNMNINIRMGSKLLPVKLLYYPSFRAAYISAGWQTFAVASNLKAGDVCIFELPNEQDQLLDVHIYRAGRLSIL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00009 322 ProSiteProfiles B3 DNA-binding domain profile. 219 317 IPR003340 GO:0003677
Stsc272017g00009 322 SUPERFAMILY DNA-binding pseudobarrel domain 14 112 IPR015300 -
Stsc272017g00009 322 Gene3D - 12 112 IPR015300 -
Stsc272017g00009 322 MobiDBLite consensus disorder prediction 123 179 - -
Stsc272017g00009 322 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc272017g00009 322 CDD B3_DNA 218 315 IPR003340 GO:0003677
Stsc272017g00009 322 PANTHER B3 DOMAIN-CONTAINING 9 305 - -
Stsc272017g00009 322 MobiDBLite consensus disorder prediction 137 161 - -
Stsc272017g00009 322 SMART B3_2 220 317 IPR003340 GO:0003677
Stsc272017g00009 322 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc272017g00009 322 Gene3D - 201 317 IPR015300 -
Stsc272017g00009 322 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc272017g00009 322 SUPERFAMILY DNA-binding pseudobarrel domain 213 316 IPR015300 -
Stsc272017g00009 322 Pfam B3 DNA binding domain 220 316 IPR003340 GO:0003677
Stsc272017g00009 322 Pfam B3 DNA binding domain 25 108 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00009 Stsc-Chr272017 51292 53513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00009 19 319 B3 DNA Binding Superfamily AT3G18990 28.653 1.15e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00009 B3 3.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00009 - - adu:107471605 316.235