Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00008 ATGCCAACAAGACGACGTAAAAGACCATATTTGGTTGTTTTCTCTCCTGGGACCAAGGGGTTTCAAGCTCTGATCGAAGCTATGAAGTTCAAGTCAGAAAATCCCTCTTTCATACTCAAGTTAACAAAAGCTAATACATCAACATCACCAGCTACCATACCATATGCCTTCTTCAGGAAGTATTTTAAAAAGAAGGAGCCAAATGTAAAGATACAGTTCGAAAACAAGTTGTGGCCTACAAAGCTGATCCATTATCCATCATTGTCTAAGGCCTGTATCTCCAGCGGTTGGCAGTATTTTATTCTTACCAGTAATTTAAAAGCTGGAGATGTTTGTGTCTTTGAGCTCATCAAAGTAGAAGAACGAGTGCTTGATGTTCATATTTATAGAGCTCATGGTTAG 402 0.3881 MPTRRRKRPYLVVFSPGTKGFQALIEAMKFKSENPSFILKLTKANTSTSPATIPYAFFRKYFKKKEPNVKIQFENKLWPTKLIHYPSLSKACISSGWQYFILTSNLKAGDVCVFELIKVEERVLDVHIYRAHG 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00008 133 Gene3D - 18 132 IPR015300 -
Stsc272017g00008 133 SMART B3_2 37 132 IPR003340 GO:0003677
Stsc272017g00008 133 Pfam B3 DNA binding domain 40 131 IPR003340 GO:0003677
Stsc272017g00008 133 ProSiteProfiles B3 DNA-binding domain profile. 36 132 IPR003340 GO:0003677
Stsc272017g00008 133 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 131 IPR044837 -
Stsc272017g00008 133 SUPERFAMILY DNA-binding pseudobarrel domain 30 132 IPR015300 -
Stsc272017g00008 133 CDD B3_DNA 35 130 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00008 Stsc-Chr272017 49230 50500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00008 53 132 REM Transcription Factor Family AT1G49480 35.000 1.60e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00008 B3 9.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00008 - - adu:110272500 142.51