Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00007 ATGGCTTCTTCTGCCTCCCAACAAAACAACCATTCTCCTTCAACTGTGATCCGTTTCTTCAAGATTGTTCTCCAAAAAAGCCTTCAACATGGAACTCTTAAGGTACCAAAGAAGTTCAGTAAGAAATATGGTGATGGTTTGCCGAATCCAGTGTTTCTCAAGCCTCCGGATGGAACTGAATGGAAAATAGATTGGACTAAGCAAGATGGTGAAGTTCTGTTTGAGAAGGGTTGGAAAGAGTTTGCAACATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTACAATGGAACTTCTGAAATTGAAGTACACATACATGACACGAGTTGCCTTGAAATAGACTATCCTTCCAATGACAACTCGGTTGGGATCTCGAAGAAACAGCAACGGCAAAAGAAAAAGGTGAATGCAGAGCCAAAGGCATCAACTCCTTCTAGAAGTAAACGATTGAAACGTACTGCCGAAACTACGGATGAGGAAGGAAGCCCCAATACACAAAACTGGAAGCAAAATGCCAATAGTGAAGAAGAGACACAGCTTAAGATGCCAAAAAGACGACGTAAAAGGTCATATATGGCTGTTTTCTCTCCTGGGACCAAGGGCTTTCAAGCTCTGATTGAAGCTAAGAAGTTCAAGTCAGAAAATCCCTCTTTCATAGTCAAGATAACAAAAGCTAATACATCAACATCACCAGCTAATTTCCAACCTTCCTTTTATGAAAAACATTTTAAAGATGATGAGCAGCCTATACATATAAGGTTTGAGAGGGAGTTGTTGCCTGCAAAGGTTTGCTATTATCAACATAGTTCTCTTGCCGTTATCTCTGCTGGTTGGCGCCATTTTCATCGAACAAGTAAATTACAACCCGGGGATGTTACTGTCTTCGAGCTTGTCAATAGAGAAGATCCACTGTTTGACGTTCATATTTATAGAGCCCATGGTTAG 951 0.4069 MASSASQQNNHSPSTVIRFFKIVLQKSLQHGTLKVPKKFSKKYGDGLPNPVFLKPPDGTEWKIDWTKQDGEVLFEKGWKEFATYYSLDNGHLLWFEYNGTSEIEVHIHDTSCLEIDYPSNDNSVGISKKQQRQKKKVNAEPKASTPSRSKRLKRTAETTDEEGSPNTQNWKQNANSEEETQLKMPKRRRKRSYMAVFSPGTKGFQALIEAKKFKSENPSFIVKITKANTSTSPANFQPSFYEKHFKDDEQPIHIRFERELLPAKVCYYQHSSLAVISAGWRHFHRTSKLQPGDVTVFELVNREDPLFDVHIYRAHG 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00007 316 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Stsc272017g00007 316 Gene3D - 13 112 IPR015300 -
Stsc272017g00007 316 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc272017g00007 316 MobiDBLite consensus disorder prediction 161 179 - -
Stsc272017g00007 316 PANTHER B3 DOMAIN-CONTAINING 10 307 - -
Stsc272017g00007 316 CDD B3_DNA 218 313 IPR003340 GO:0003677
Stsc272017g00007 316 MobiDBLite consensus disorder prediction 133 160 - -
Stsc272017g00007 316 Gene3D - 200 315 IPR015300 -
Stsc272017g00007 316 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc272017g00007 316 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Stsc272017g00007 316 SUPERFAMILY DNA-binding pseudobarrel domain 213 315 IPR015300 -
Stsc272017g00007 316 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc272017g00007 316 SMART B3_2 220 315 IPR003340 GO:0003677
Stsc272017g00007 316 ProSiteProfiles B3 DNA-binding domain profile. 276 315 IPR003340 GO:0003677
Stsc272017g00007 316 MobiDBLite consensus disorder prediction 123 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00007 Stsc-Chr272017 45407 47505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00007 19 315 B3 DNA Binding Superfamily AT3G18990 27.035 1.13e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00007 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00007 - - adu:107471605 372.859