Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00006 ATGGGTAATCACCTAACCCGAATCCAAATCTCCGACACAGATATACAAAGTGGTGCTAATGGTGGTGCAATGCTTCAGCATGTTAAACAAGTTCTTGATCAATTTGACTACTTAGTGGTTATCAATAACCACGGTTACAGCTTGCCAACAAGTTGTCAATTTGAATCCAACTTTGACTTGGATGGCTACCAAAGATTCGAGATCATCCACAATGACCAAGGCAAGGTGTTGCTTTCACTGATAAGCAAAGATGCTAAAAGGTTGATTTGTAGGAAATATAGTGACCCCATTGTCAAGAATGACATGATGCTGTGGCCATTTAAAGTCATTCCTGGTGATGGTGACAAACCAATGATTTCTGTTACATATAAGGCTCAGGAGAAGCATCTATCTGCTGAAGAATTTTCATCCATGGTTCTAACAAAAATGCAGGAGATTGCAGAGGCATATTTGAAAGCTCCTGTAAATAATGCAGTGATTACTGTGCCTGCTTATTTCAGTGATGCTCAACGTAAAGCAACAAAAGATGCTGGTGCCATTGCAGGCCTCAATGTCATGAGAATTATCAATGAGCCTATTGCTGCAGCAATTGCATATGGCCTGGACAAGGTAGCTGATTGTACTGGAGAACGAAATATTTTCATCTTTGACCTTGGTGGTGGTACTTTTGATGTGTCTCTGCTTACAATTAAAAATAAGGTCTTTGAAGTTAAGGCCACTGCAGGAAATACTCACCTTGATGGAGAAGACTTTGATAACCCGAATGGTGAATCTGCTTGA 780 0.4026 MGNHLTRIQISDTDIQSGANGGAMLQHVKQVLDQFDYLVVINNHGYSLPTSCQFESNFDLDGYQRFEIIHNDQGKVLLSLISKDAKRLICRKYSDPIVKNDMMLWPFKVIPGDGDKPMISVTYKAQEKHLSAEEFSSMVLTKMQEIAEAYLKAPVNNAVITVPAYFSDAQRKATKDAGAIAGLNVMRIINEPIAAAIAYGLDKVADCTGERNIFIFDLGGGTFDVSLLTIKNKVFEVKATAGNTHLDGEDFDNPNGESA 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00006 259 PRINTS 70kDa heat shock protein signature 221 231 - -
Stsc272017g00006 259 PRINTS 70kDa heat shock protein signature 158 178 - -
Stsc272017g00006 259 ProSitePatterns Heat shock hsp70 proteins family signature 2. 215 228 IPR018181 -
Stsc272017g00006 259 SUPERFAMILY Actin-like ATPase domain 40 203 IPR043129 -
Stsc272017g00006 259 Gene3D - 212 254 - -
Stsc272017g00006 259 SUPERFAMILY Actin-like ATPase domain 208 253 IPR043129 -
Stsc272017g00006 259 Pfam Hsp70 protein 84 253 IPR013126 GO:0005524|GO:0140662
Stsc272017g00006 259 Gene3D - 38 211 - -
Stsc272017g00006 259 FunFam Endoplasmic reticulum chaperone BiP 53 213 - -
Stsc272017g00006 259 FunFam heat shock 70 kDa protein-like 84 138 - -
Stsc272017g00006 259 PANTHER HEAT SHOCK PROTEIN 70KDA 67 253 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00006 Stsc-Chr272017 40328 41905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00006 63 253 Calmodulin-binding Proteins AT5G02500 61.111 6.88e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00006 K03283 - gmx:102667578 280.411