Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00005 ATGGCTTCCACTGCCTCCCAACAAAACAACCATTCTCCTTCAACTGTGATCCGTTTCTTCAAGATTATTCTCCAAAAAAGCCTTCAAGATGGAACTCTTAAGGTACCAAAGAAGTTCAGTAAGAAATATGGTGGTGGTGTGCCAAATCCAGTGTATCTGAAGCCTCCAGATGGTACCGAATGGAGGATAGATTGGACTAAGAAAGATGGTGAAATTCTATTTGAAAAGGGTTGGAAAGAGCTTGCAAAATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTACAATGGAACTTCCAAAATTGAAGTACACATATTTGACATGAGTGGCCTTGAAATAGACTATCCTTCCAATGACAACTCCGTTGGGATCTCGAAGAAACAGCAACGGCAAAAGAAAAAAGTGAAAGCAGCACCAAAGCCATCATCTCCTTCTAGAAGTAAAAGATTGAAACGTACCGCCAAAACTACGGATGAGAAAGGAAGCCCGGATACACAGAACTGGAAGCAAAATGCCAATAGTAAAGAAGAAGGAAGCCCGGATACACAGAACTGGAAGCAAAATGCCAATAGTAAAGAAGACAGCCAATCTGAAGAGACAGAGCTTGAGATGCCAACAAGACGACGTAAAAGGAAATGTTTGGTTGTTTTCTCACCTGGGACCAAGGGGTTTCAAGCTCTGGTTGAAGCTAGGAAGTTCAAGTCACTAAATCCCTCTTTCATACTCAAGATAACAAAAGCTAATACATCAAGATCACCAGTAGCTACCATACCATATGCCTTCTTCAGGAAGTATTTTAAAAAGAAGGAGCCAAATGTAAAGATACAGTTCGAAAACAAGTTGTGGCCTACAAAGCTGCTCTATTATCCATCATCGCCTAAGGCCTGTATGTCCAGTGGTTGGAAGCCTTTTATTCTTGCCAGTAATTTAAAAGCTGGAGATGTTTGTGTCTTTGAGCTCATCAAAGTAGAAGAACGAGTGCTTGATGTTCATATTTATAGAGCTCATGGTTAG 1020 0.4069 MASTASQQNNHSPSTVIRFFKIILQKSLQDGTLKVPKKFSKKYGGGVPNPVYLKPPDGTEWRIDWTKKDGEILFEKGWKELAKYYSLDNGHLLWFEYNGTSKIEVHIFDMSGLEIDYPSNDNSVGISKKQQRQKKKVKAAPKPSSPSRSKRLKRTAKTTDEKGSPDTQNWKQNANSKEEGSPDTQNWKQNANSKEDSQSEETELEMPTRRRKRKCLVVFSPGTKGFQALVEARKFKSLNPSFILKITKANTSRSPVATIPYAFFRKYFKKKEPNVKIQFENKLWPTKLLYYPSSPKACMSSGWKPFILASNLKAGDVCVFELIKVEERVLDVHIYRAHG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00005 339 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc272017g00005 339 PANTHER B3 DOMAIN-CONTAINING 10 325 - -
Stsc272017g00005 339 SMART B3_2 242 338 IPR003340 GO:0003677
Stsc272017g00005 339 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc272017g00005 339 MobiDBLite consensus disorder prediction 129 152 - -
Stsc272017g00005 339 MobiDBLite consensus disorder prediction 194 210 - -
Stsc272017g00005 339 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Stsc272017g00005 339 Pfam B3 DNA binding domain 245 337 IPR003340 GO:0003677
Stsc272017g00005 339 Gene3D - 13 112 IPR015300 -
Stsc272017g00005 339 ProSiteProfiles B3 DNA-binding domain profile. 242 338 IPR003340 GO:0003677
Stsc272017g00005 339 MobiDBLite consensus disorder prediction 162 193 - -
Stsc272017g00005 339 MobiDBLite consensus disorder prediction 122 210 - -
Stsc272017g00005 339 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Stsc272017g00005 339 CDD B3_DNA 240 336 IPR003340 GO:0003677
Stsc272017g00005 339 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc272017g00005 339 SUPERFAMILY DNA-binding pseudobarrel domain 239 336 IPR015300 -
Stsc272017g00005 339 Gene3D - 221 338 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00005 Stsc-Chr272017 37619 40242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00005 19 338 B3 DNA Binding Superfamily AT3G18990 28.779 7.98e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00005 B3 4.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00005 - - adu:107471605 320.472