Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00004 ATGGCTTCCTCTGCCTCCCAACAAAACAACCATTCTCCATCAACCGTGATCCGTTTCTTCAAGATTGTTCTCCAAAAAAGCCTTCAAGATGGAACTCTTAAGGTACCAAAGAAGTTCAGTAAGAAATATGGTGATGATTTGCCGAATCCAGTGTATCTCAAGCCTCCGGATGGCAATGAATGGAAAATAGATTGGACTAAGCAAGATGGTGAAGTTCTATTTGAGAAGGGCTGGAAAGAGTTTGCAAAATATTACTCTCTGGACAATGGTCATTTGTTGTGGTTTGAGTACAATGGAACTTCCGAAATTAAAGTACACATCCTTGACCCGAGTTGCCTTGAAATAGACTATCCTTCCAATGACAACTCAGTTGGGATCTCGAAGAAACAGCAACGGCTAAAGGAAAAAGTGAAAGCAGAACCAGAGCCATCATCTCCTTCTAGAGGTAAAAGATTGAAACGTACCACCGAAACTACGGATGAGGAAGGAAGCCTCGATACACAAAACTGGAAGCAAAATGACAATAATAAAGAAGATAGGCAATCTGAAGAGGCACAGCTTATGATGCCAACAAAACGATGTAATGTGGATGTTTTCTGTCCTGGGACCATGGGGTTTCAAGCTCTGATTGAAGCTAAGAAGTTCAAGTCAGAAAATCCCTCTTTCATAGTCAAGGCAACGAAAGCTAATATATCAACATCACGACCTACTTTCCAAGCTTCCTTTTATAAAAAACATTTTAAAGATGATGAGCAGCATATACAGATAAGGTTTGAGAGGGAGTTATTTCCTGCAAAGGTTTTGTCTTATCGAAGTCATGCCTTTATCACTGCTGGTTGGCGCCTTTTTACTCGAAGAAGTAAATTACAACCCGGGGATGTTACTCTCTTTGAGCTCGTCAATAGAGAAGATCCACTGTTTGATGTTCATATTTATAGAGCCCACGAGCAAGCCTTGGAGATTAGGACCGGTGGATTTCGACCTCAGATAGAAAGTCGGAAGTTCAGCTCAGAAAATCCCTTTTCATAG 1029 0.4101 MASSASQQNNHSPSTVIRFFKIVLQKSLQDGTLKVPKKFSKKYGDDLPNPVYLKPPDGNEWKIDWTKQDGEVLFEKGWKEFAKYYSLDNGHLLWFEYNGTSEIKVHILDPSCLEIDYPSNDNSVGISKKQQRLKEKVKAEPEPSSPSRGKRLKRTTETTDEEGSLDTQNWKQNDNNKEDRQSEEAQLMMPTKRCNVDVFCPGTMGFQALIEAKKFKSENPSFIVKATKANISTSRPTFQASFYKKHFKDDEQHIQIRFERELFPAKVLSYRSHAFITAGWRLFTRRSKLQPGDVTLFELVNREDPLFDVHIYRAHEQALEIRTGGFRPQIESRKFSSENPFS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00004 342 SUPERFAMILY DNA-binding pseudobarrel domain 215 315 IPR015300 -
Stsc272017g00004 342 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc272017g00004 342 MobiDBLite consensus disorder prediction 124 182 - -
Stsc272017g00004 342 Gene3D - 13 112 IPR015300 -
Stsc272017g00004 342 ProSiteProfiles B3 DNA-binding domain profile. 275 315 IPR003340 GO:0003677
Stsc272017g00004 342 PANTHER B3 DOMAIN-CONTAINING 10 307 - -
Stsc272017g00004 342 Gene3D - 206 317 IPR015300 -
Stsc272017g00004 342 MobiDBLite consensus disorder prediction 128 161 - -
Stsc272017g00004 342 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc272017g00004 342 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc272017g00004 342 SMART B3_2 223 315 IPR003340 GO:0003677
Stsc272017g00004 342 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Stsc272017g00004 342 SUPERFAMILY DNA-binding pseudobarrel domain 13 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00004 Stsc-Chr272017 30571 35684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00004 19 316 B3 DNA Binding Superfamily AT3G18990 26.347 1.01e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00004 B3 2.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00004 - - adu:107471605 380.178