Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00003 ATGGCTTCCTCTACATTCCAACACAACAATCATTCTCCTTCAACTGTGATCCGTTTCTTCAAGATTGTTCTCAAAAAAAGCCTTCAAGATGGAACTCTTAAGGTACCAAAGAAGTTTTGTAAGAAATATGGTGATGATTTGCTGAATCCAGTGTATCTGAAGCCTCCAGATGGTACTGAATGGAAAATAGATTGGACTAAGAAAGATGGTGAAATTCTATTTGAAAAGGGTTGGAAAGAGCTTGCAACATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTATGATGGAACTTCCAAAATTGAAGTACACATATTTGACATGAGTGGCCTTGAAATAGACTATCCTTCCAATGACCACATCAGTGGTGACGACTCGGTTGGGATCTTGAACAAAGAACAGTCACGGAAGAGGAAAGAAGTAAAAGAAGAATCAGAGCCATCATCTCCTTACAGAAGTAAAAGATTGAAAAGAAGCCCCAATAAACAAAACCAGAAGCAGCATGTCAATAATGAAGAAGATAGCCAATCCGAAGAGACACAACATACGAAGCCAGTTAATCGATGTAAAACACGATATGTGAAGGATTTCTTTCCTGGGACCAGTGGGTTTCAAGCTCTAAATGAAGCACAGAGATTCAACTCAAGAAATCCATTTTTCATAGTCAAGACAAGGCAAGCCAATCTATCAAGAACAAAAGTTAGTTTTGACGCTTCCTTTTTCAGAAAATATTTTAATAAGGAGCAGAATGTACAGATAAGGTTTCAGGGAAAGTTGTTGTCTGCAAAGCTGCAATGTTATCCATATCTCACTCAAGCCGTTATGACTTCCGGTTGGGGCCTTTTTGCTCGAGAAAGTAAATTACAGCCTGGGGATGTTATTATTTTTGAGCTCATCAAAAGAGAAGTTCCAACATTTGACGTTCATATTTATAGAGCCCAAGCTTTCGAGCCTGGGGCCGTTGGGCTTCAGTTTCCGATAGAGACTAGAACATTCAGATGTCCAAAAGAATTTAAGAACTTCGAGTCAGAAAATCCCTCTTTTATAATCAAGATAACGCGAAATGGTCTATTGAGAGCAAGAGCTGGCATACCAGCTTCCTTCTTCAAGAAGTATTTTGAAAAGAAGGAGGCATATGTAGAGATACGATTTGATAGCAAGTTTTGGCCTGCAAAGTTGCGCTGTTATACATCTAATGCTTATATCTCCTCCGGTTGGCGGGCTTTTGCTATTGACAACAAGTTAAAAGCTGGAGATGTTTGTATCTTTGAGCTCGTCAAAGATGCAATGCTTGACGTTCATATTCATCGAGCGGAAGCTTAG 1329 0.3928 MASSTFQHNNHSPSTVIRFFKIVLKKSLQDGTLKVPKKFCKKYGDDLLNPVYLKPPDGTEWKIDWTKKDGEILFEKGWKELATYYSLDNGHLLWFEYDGTSKIEVHIFDMSGLEIDYPSNDHISGDDSVGILNKEQSRKRKEVKEESEPSSPYRSKRLKRSPNKQNQKQHVNNEEDSQSEETQHTKPVNRCKTRYVKDFFPGTSGFQALNEAQRFNSRNPFFIVKTRQANLSRTKVSFDASFFRKYFNKEQNVQIRFQGKLLSAKLQCYPYLTQAVMTSGWGLFARESKLQPGDVIIFELIKREVPTFDVHIYRAQAFEPGAVGLQFPIETRTFRCPKEFKNFESENPSFIIKITRNGLLRARAGIPASFFKKYFEKKEAYVEIRFDSKFWPAKLRCYTSNAYISSGWRAFAIDNKLKAGDVCIFELVKDAMLDVHIHRAEA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00003 442 Pfam B3 DNA binding domain 354 440 IPR003340 GO:0003677
Stsc272017g00003 442 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Stsc272017g00003 442 Pfam B3 DNA binding domain 221 315 IPR003340 GO:0003677
Stsc272017g00003 442 SUPERFAMILY DNA-binding pseudobarrel domain 215 315 IPR015300 -
Stsc272017g00003 442 MobiDBLite consensus disorder prediction 134 155 - -
Stsc272017g00003 442 ProSiteProfiles B3 DNA-binding domain profile. 277 316 IPR003340 GO:0003677
Stsc272017g00003 442 MobiDBLite consensus disorder prediction 134 188 - -
Stsc272017g00003 442 MobiDBLite consensus disorder prediction 169 188 - -
Stsc272017g00003 442 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc272017g00003 442 SMART B3_2 351 441 IPR003340 GO:0003677
Stsc272017g00003 442 SMART B3_2 221 316 IPR003340 GO:0003677
Stsc272017g00003 442 CDD B3_DNA 220 314 IPR003340 GO:0003677
Stsc272017g00003 442 Gene3D - 13 112 IPR015300 -
Stsc272017g00003 442 ProSiteProfiles B3 DNA-binding domain profile. 349 441 IPR003340 GO:0003677
Stsc272017g00003 442 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 341 440 IPR044837 -
Stsc272017g00003 442 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc272017g00003 442 CDD B3_DNA 348 439 IPR003340 GO:0003677
Stsc272017g00003 442 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Stsc272017g00003 442 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Stsc272017g00003 442 SUPERFAMILY DNA-binding pseudobarrel domain 343 440 IPR015300 -
Stsc272017g00003 442 Gene3D - 204 318 IPR015300 -
Stsc272017g00003 442 Gene3D - 331 441 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00003 Stsc-Chr272017 26217 29473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00003 341 440 B3 DNA Binding Superfamily AT3G18990 32.039 2.23e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc272017g00003 B3 1.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00003 - - adu:107471605 542.347