Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00002 ATGGAATCCAACCAACCGAATCCAACACCGTTACCACTATTCCCACCTGGAATCCCAATCCCACCGACGGCCAGACAAAACGCCGTAACGGCCACCGCCAGTAATATCCCAACGCCGTTTCTCTTAATCCCCAAACCCGAACCCGTTGAAGAATGCAGCATCCCCGTCGCCATCCCCACCGCCACCGCTACCTCGAACAACGACGACATCAAACCTATATTCCTAAGTGGGCCCCACCGCGAAACCCTACCTCCTTCAGCCACCTCCTGCAACCAAAACGACGGCGAAAATGGCCTATACGACGAGTTCAATCGAGTCTCTCAGCTCTTCCGTATGGCTTTCGCACAGGGGACGCAGCAGCTTGAACCATCTCCGCAAAACGAGTTCTCAAACGACACCGTTTTGGACCCTAATTCGGGGGCTATTGTACCGGTGCCTCCTCCTCCTCCGCAGCAGTACGGTGGTTACGGGAATAGGAACGATGCCGCGGGGTGCGAGGGTTCTTCGTCTAACGGTGGAAACACGTCGCTGGTGAAGAGGAATAGGTCGAAGGAGCTTGTGAGGGTGAAAGATCTGACAATTAAGGACCAGCGGCATTTCCGTGAAGTGGTGAGGCGGACGAGGATGATTTATGACTCGCTTCGGGTGCTGGCGACGGCGGAGGAGGAGAGGAAGATGATGATGGCTGATTGGAAGAAGGCCAGAGGGGACCTTAGGGCTTCGAATTTGATGAAAACTTATGAGCTTTGGCTTAACCGTGACAAGAGGATCGTCGGCGCTATCCCTGGGGTTTGTGTTGGGGATGTGTTCCTTTACAGGATGGAATTATGTGTGGTAGGCCTTCACGGGCAGACGCAGGCCGGAATTGATTATCTTCCGGCGAGTTTGAGCTCCAATGGTGAGCCAATTGCCACCAGTGTCATTGTTTCGGGTGGCTATGAGGATGATATGGATGAGGGTGATGTTATCATTTACTCGGGTCATGGCGGCCAGGACAAGCATTCTAAGCAGGTGTTTCATCAGAAGTTGGAAGGTGGGAACTTGGCATTGGAGAGGAGTATGTACTATGGGATTGAGGTGAGGGTTATTCGGGGATTGCGGTGCGAGGGAACTGTCAACGCTTCTGGTAAGGTTTATGTTTATGATGGGTTGTATAGGATTATTGATTGCTGGTTTGATGTCGGGAAGTCCGGTTTTGGTGTTTATAAGTATAAGCTGTTTAGGATTGATGGGCAGCCTAAGATGGGTAGTGCTGTTCTTAAGGAGGCTGATATGCTTAAGAGGGATCCATTGTGTTTTAAGCCTATGTGTTGTTTGTCTCTTGATATTTCGAATCAGCGGGAGCCTGTTGGGATTCGGCTTTTTAATGACATTGATAAGAGTCGTGACCCGCTTTGTTACGAGTATCTTCCAAAGACTAATTTTCCGGCGTTCGTGTTTCACCAGACTGGGAACGGCACAGGTTGTGAGTGTGTGAATGGTTGTTTTGAAGGCTGCTTTTGTGCCATGAAAAATGGAGGTGAATTTGCTTATAATCGGAGTGGGATTCTGTTGAGAGGGAAGCCTGTAATATTTGAATGTGGCCCCTTTTGCCGATGTTCTCCTCATTGTCAGAATCGTGTCACACAAAAGGGGTTGAAAAGTAGGTTGGAAGTGTTTAGGTCAAGGGAAACTGGCTGGGGAGTTAGATCCTTGGACCTTATACAAGCTGGTGCTTTTATATGCGAATATACAGGTGTTGTCGTAACCAGGCAGCAAGCACAAATTTTGACCATGAATGGTGATGCATTAATATATCCTAATCGGTTTACTGACAGGTGGGCAGAATGGGGGGATGTATCTTTAATAAATTCCGATTATGTTCGTCCGTCATTTCCGTCAATACCTCCTTTAGATTTTGCTTTGGATGTGTCAAGAATGAGGAATGTAGCCTGCTATATCAGTCATAGTTCATCTCCAAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGACCATCCCTCCGATGAGAGAGCTCAGCCTTGATTACGGGGTGACTGATGAGTGGACAGGCAAGCTCGCTATATGTAACTGA 2115 0.4837 MESNQPNPTPLPLFPPGIPIPPTARQNAVTATASNIPTPFLLIPKPEPVEECSIPVAIPTATATSNNDDIKPIFLSGPHRETLPPSATSCNQNDGENGLYDEFNRVSQLFRMAFAQGTQQLEPSPQNEFSNDTVLDPNSGAIVPVPPPPPQQYGGYGNRNDAAGCEGSSSNGGNTSLVKRNRSKELVRVKDLTIKDQRHFREVVRRTRMIYDSLRVLATAEEERKMMMADWKKARGDLRASNLMKTYELWLNRDKRIVGAIPGVCVGDVFLYRMELCVVGLHGQTQAGIDYLPASLSSNGEPIATSVIVSGGYEDDMDEGDVIIYSGHGGQDKHSKQVFHQKLEGGNLALERSMYYGIEVRVIRGLRCEGTVNASGKVYVYDGLYRIIDCWFDVGKSGFGVYKYKLFRIDGQPKMGSAVLKEADMLKRDPLCFKPMCCLSLDISNQREPVGIRLFNDIDKSRDPLCYEYLPKTNFPAFVFHQTGNGTGCECVNGCFEGCFCAMKNGGEFAYNRSGILLRGKPVIFECGPFCRCSPHCQNRVTQKGLKSRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVVTRQQAQILTMNGDALIYPNRFTDRWAEWGDVSLINSDYVRPSFPSIPPLDFALDVSRMRNVACYISHSSSPNVLVQFVLYDHNNLMFPHLMLFAMETIPPMRELSLDYGVTDEWTGKLAICN 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00002 704 MobiDBLite consensus disorder prediction 1 22 - -
Stsc272017g00002 704 SMART set_7 548 697 IPR001214 GO:0005515
Stsc272017g00002 704 Gene3D SET domain 417 704 IPR046341 -
Stsc272017g00002 704 ProSiteProfiles YDG domain profile. 259 408 IPR003105 -
Stsc272017g00002 704 SMART preset_2 440 532 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272017g00002 704 Pfam SAD/SRA domain 258 412 IPR003105 -
Stsc272017g00002 704 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 121 704 IPR025794 GO:0016571
Stsc272017g00002 704 MobiDBLite consensus disorder prediction 160 179 - -
Stsc272017g00002 704 ProSiteProfiles Pre-SET domain profile. 487 545 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272017g00002 704 Gene3D - 256 416 IPR036987 -
Stsc272017g00002 704 SMART G9a_1 254 412 IPR003105 -
Stsc272017g00002 704 Pfam Pre-SET motif 443 540 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc272017g00002 704 ProSiteProfiles SET domain profile. 548 691 IPR001214 GO:0005515
Stsc272017g00002 704 SUPERFAMILY SET domain 432 703 IPR046341 -
Stsc272017g00002 704 Pfam SET domain 559 691 IPR001214 GO:0005515
Stsc272017g00002 704 MobiDBLite consensus disorder prediction 8 22 - -
Stsc272017g00002 704 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 240 425 - -
Stsc272017g00002 704 MobiDBLite consensus disorder prediction 163 179 - -
Stsc272017g00002 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 167 692 - -
Stsc272017g00002 704 SUPERFAMILY PUA domain-like 240 420 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00002 Stsc-Chr272017 18626 20903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00002 201 693 Su(var)3-9 homologs AT5G04940 39.521 6.45e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc272017g00002 SAD_SRA 2.7e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00002 K11420 - gmx:100795514 942.954