Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272017g00001 ATGAAGCGCGAGTTCTACGAAATCTCCGACGACGAATGGGACCAACACGAACAACACTTCAAACCCTCACGAGTTCTCAAGAGACCCAACTCCGCTCCTCCTTCTCCTCCTCCAATCGAGTCCTTCGCTTTCAACAACCACCACACTATCAATTGCGACGACGAAGACGACGATTGCGTTGAAATCACTCGCCCTTCTACCGCTTTTCCGCACGAATTGGACGACTTGGAGGATGCTGACGTCGATAACCACAATCCCGCTGCTGCAGCGGCTCCGAATCGTGGCCGTCGGTTCATCATCGACGACGATGACGACGAGGAGGAGGAGGAAGAGGAAAATAATAGGGATAGGGATAGGAATGTTGCGGAGTTGTATGAAATAGGATCATCTTCTTCGGAGGAAATCGAGGAAGATGGGGTTATGGAAGGTGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCGAAGATATCGGCGGAGCTGAAGGGGGAGCTTTTCGGGTCTTCAGGGACAGCGTGTGATAGGTATTCTGAAGTGGAGTCTTCTTCAGTGAGGATCGTCACTCAGGAAGATGTAGACGTTGCGTGTGGGCATGAGGATTCGGATTTTCAGCCTCTACTGAAGCCGTATCAGCTTGTTGGTGTCAACTTTTTGCTTCTATTGTATCGGAAGCGGATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTGGGCAAAACAGTTCAGGCCATTACATATTTAACTTTGTTGAACCACTTGCATAATGATCCTGGTCCACATCTCATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGAGAACTAAAGAGGTGGTGCCCATCATTTTCTACTCTTCAGTACCATGGTGCTGGACGAACAACATATTGCAAGGAGTTGAACTCCCTCTCAAAGGCAGGGTTGCCTCCTCCATTTAACGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGAAAGATGATCGTAAAATATTGA 996 0.4819 MKREFYEISDDEWDQHEQHFKPSRVLKRPNSAPPSPPPIESFAFNNHHTINCDDEDDDCVEITRPSTAFPHELDDLEDADVDNHNPAAAAAPNRGRRFIIDDDDDEEEEEEENNRDRDRNVAELYEIGSSSSEEIEEDGVMEGDVVGRALHKCAKISAELKGELFGSSGTACDRYSEVESSSVRIVTQEDVDVACGHEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKRWCPSFSTLQYHGAGRTTYCKELNSLSKAGLPPPFNVLLVCYSLFERHRKMIVKY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272017g00001 331 Gene3D - 184 331 IPR038718 -
Stsc272017g00001 331 Pfam SNF2-related domain 224 324 IPR000330 GO:0005524|GO:0140658
Stsc272017g00001 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 326 IPR027417 -
Stsc272017g00001 331 CDD DEXHc_Snf 206 330 - -
Stsc272017g00001 331 PANTHER SNF2/RAD54 HELICASE FAMILY 104 328 - -
Stsc272017g00001 331 MobiDBLite consensus disorder prediction 1 41 - -
Stsc272017g00001 331 MobiDBLite consensus disorder prediction 77 121 - -
Stsc272017g00001 331 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272017g00001 Stsc-Chr272017 10680 12614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272017g00001 225 322 RAD5 or RAD16-like Gene Family AT1G05120 33.333 2.57e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc272017g00001 SNF2_N 1.7e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272017g00001 K14439 - gmx:100806323 432.18