LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272015g00011	ATGAGCTTTCAGGATATCGAGGCCGGCCGGCCGTTCGCTTCTCGCCGGGGCCACATCAACGGCAAGCAAGACCCCACTCAGGCGGTGGCTGCCGGAATTTTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGGCTTGTTAACACCCTAGGAACCCCCAAAGACACCCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGGCTGCACATTGGACAACTGGTGAAGGATACTTCAGCGAAGCTTAAACAAGCTAGTGAAATTGATCACCAATCTGATATCAATGCAAGCAAGAAGATAGCAGATGCTAAACTGGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCAGAGAGGGAAACAGCTTACACTCCATTTGTTCCACAAGCAGCTCCATCCAGCTATTCAGCTAATGAAGATGCTAACTCTGGTAAGGCTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTCTTGTTTTTGGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGATCTTGCTGTGCTTGTGCATGAGCAAGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGCCGCAACTGCACAAGCAAGAACTCAACTTGCTAAAGCTTCAAAGACCCAAAGATCAAATTCTTCTTTGACATGCTTGCTTTTGGTGATATTTGGTATTGTACTTCTAATCGTCATCATTGTTCTGGCTGCTTAG	816	0.4632	MSFQDIEAGRPFASRRGHINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHQSDINASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAAPSSYSANEDANSGKAPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHAATAQARTQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272015g00011	271	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	178	240	IPR000727	-
	Stsc272015g00011	271	Gene3D	-	20	133	-	-
	Stsc272015g00011	271	FunFam	Syntaxin-22 like	171	271	-	-
	Stsc272015g00011	271	Pfam	SNARE domain	215	266	IPR000727	-
	Stsc272015g00011	271	Pfam	Syntaxin-like protein	30	129	IPR006011	GO:0016020
	Stsc272015g00011	271	FunFam	Syntaxin-22 like	20	133	-	-
	Stsc272015g00011	271	Gene3D	-	172	271	-	-
	Stsc272015g00011	271	ProSitePatterns	Syntaxin / epimorphin family signature.	184	223	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Stsc272015g00011	271	MobiDBLite	consensus disorder prediction	134	154	-	-
	Stsc272015g00011	271	MobiDBLite	consensus disorder prediction	134	149	-	-
	Stsc272015g00011	271	SMART	SynN_4	15	127	IPR006011	GO:0016020
	Stsc272015g00011	271	MobiDBLite	consensus disorder prediction	1	23	-	-
	Stsc272015g00011	271	SUPERFAMILY	t-snare proteins	23	233	IPR010989	GO:0016020\|GO:0016192
	Stsc272015g00011	271	CDD	SynN	23	146	IPR006011	GO:0016020
	Stsc272015g00011	271	PANTHER	SYNTAXIN	26	263	IPR045242	-
	Stsc272015g00011	271	SMART	tSNARE_6	173	240	IPR000727	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272015g00011	Stsc-Chr272015	47380	50862	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272015g00011	1	259	SNARE and Associated Proteins	AT5G46860	77.692	3.56e-145	406

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272015g00011	-		-	gmx:547656	407.912