Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272015g00009 ATGACATTGGTTATCAGAGAAAGGAGGCACCAACAAGCTCTAAGGCTCTCTCTGCCGCAAAGAAACCCTCCTTCATTGTCGTCTTCATCGTCGTCATCGTTGTCGCCGCCAACACCATCTCATCCTCATGCATCACTGTCAATATCTGGATCCTCTTCATCCTCCTCCTCGGTGGTAGTTAGCCTCTCAGACCTCGAGAAGCTGGCGGTTCTTGGTCATGGAAACGGTGGCATAGTGTACAAGGTTCGACACAAGAAGAGTCATTGCTTATACGCATTGAAAGTGATACGCTCCAACCCCATCATTGGCATTAATGGCATCCCTAACCACGTGGAGGCAGAGATTCTGAAGAAGATGGATTCGCCGTACGTAGTGAAGTGCCATGCGGTTTTCGAGAACGGTTCGTGCAGTGACAATGGTGTAAGCTTTGTTATGGAGTACATGGGTGGAGGCTCCTTGTATGATATCTTGAAACATCATCGTACACTCTCCGAGGACGTGATCTCTGAGGTTGCGAAGCGCGTGTTGGAAGGGCTTAACTATTTGCATGCCATGCACGTTGTGCACAGAGACATTAAGCCCTCCAACTTGCTCGTCAATGAGAAGGGTGAGGTTAAGATAGCGGATTTTGGTGTGAGCCATGTGGTGGTGGAAGAGAAAGAGAGTAATGGTGGTGGTGGTGGTGATTATGATCTTCATCACTATGGCAATGCAGGCACGTGTGCATACATGAGTCCTGAGAGGATTGATCCTGAGAGTTGGAGAGGTGGTGGTGGTGGTGGTGAGAAGAACAAGAACAATGGTGGGGATGATTTCGCCGGCGATGTATGGTCGGTGGGGGTGGTGGTTTTGGAGTGTTTGCTGGGGCATTTTCCTTTGATTGGGGCGGAACAGAGACCAGACTGGGCAACACTGATGTGTGCAATTTGCTTTGGGGAAAAGGTGGAGATGCCGGAGACGGCGTCGCTGGAGTTCAAGAGCTTTGTACTGAGGTGTCTTGAGAAGGATTGGAGGAAGAGAGCAACAGTGAAGGAGCTTCTTCAACACCCTTTTGTGAATAGAGGGTGTTGCAATTTCAGTAGAAAAAGGCTTGGTGATTATGTTGTTCTTCAGGGGTGA 1119 0.4924 MTLVIRERRHQQALRLSLPQRNPPSLSSSSSSSLSPPTPSHPHASLSISGSSSSSSSVVVSLSDLEKLAVLGHGNGGIVYKVRHKKSHCLYALKVIRSNPIIGINGIPNHVEAEILKKMDSPYVVKCHAVFENGSCSDNGVSFVMEYMGGGSLYDILKHHRTLSEDVISEVAKRVLEGLNYLHAMHVVHRDIKPSNLLVNEKGEVKIADFGVSHVVVEEKESNGGGGGDYDLHHYGNAGTCAYMSPERIDPESWRGGGGGGEKNKNNGGDDFAGDVWSVGVVVLECLLGHFPLIGAEQRPDWATLMCAICFGEKVEMPETASLEFKSFVLRCLEKDWRKRATVKELLQHPFVNRGCCNFSRKRLGDYVVLQG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272015g00009 372 MobiDBLite consensus disorder prediction 16 51 - -
Stsc272015g00009 372 SMART serkin_6 65 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272015g00009 372 Gene3D Phosphorylase Kinase; domain 1 43 149 - -
Stsc272015g00009 372 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 27 354 - -
Stsc272015g00009 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Stsc272015g00009 372 ProSiteProfiles Protein kinase domain profile. 65 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272015g00009 372 SUPERFAMILY Protein kinase-like (PK-like) 56 356 IPR011009 -
Stsc272015g00009 372 Gene3D Transferase(Phosphotransferase) domain 1 150 362 - -
Stsc272015g00009 372 Pfam Protein kinase domain 66 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272015g00009 372 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272015g00009 Stsc-Chr272015 42169 43287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272015g00009 1 353 MAP Kinase Kinase Gene Family AT1G32320 50.142 7.05e-109 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Stsc272015g00009 Pkinase 6.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272015g00009 K20604 - adu:107487017 575.859