Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272015g00008 ATGACTGGAGTGAGTACCAGCGGTGGAGACCACGGCGGCGGTGTGCCGGTGCCGGCGCCGGCGCCGGCACCGATGCCGAGCGCGAACACTCCGCCGCCGTTCCTGAGCAAGACTTACGACATGGTAGACGATCCTTCAACGGACCCGATAGTGTCTTGGAGCGCAACGAACAACAGCTTCGTGGTTTGGAACCCACCGGAATTCGCGAGGGACCTTCTGCCGAAATACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGGCAGTTGAACACTTACGGTTTCAAGAAGGTTGATCCAGATCGCTGGGAGTTTGCAAATGAAGGATTTTTGAGGGGTCAAAAGCACTTACTCAGAACTATAACCCGGCGGAAACCTGCCCATGGTCATACTCATCAACAGGCTCCCCAATCAAATGGACAGACTTCATCGGTAGGGGCATGTGTGGAAGTTGGGAAGTTTGGGATTGAGGAAGAGGTTGAGAGACTTAAAAGAGATAAGAACGTGCTCATGCAAGAGCTTGTGAGGTTGCGACAGCAGCAACAAGCCACTGATGGAAAGATGCAGACAATGGCTCAGCGCCTTCATGGAATGGAGCAACGACAACAACAAATGATGTCATTTCTTGCAAAAGCTGTTCAAAGCCCTGGATTCTTTGCTCAGTTTGTGCAGCACCAAAATGAGAATAATAGGCGCATAACTGAAGTCAATAAAAAGCGTCGGCTCAGGCCGGAAGGCACTTTTGAGACTGAGCCTGCTACTGTTCCCGATGGACAAATTGTGAAATATCAGCCTATGATGAATGATGTAGCAAAATCAATGCTGAAGCAAATCATCAAATGGGATGCTTCTCATGTTGATGCTCTAAGTAAAAACTCTGATAATTACTTGATTGCCGATGGTTCATCTAGTGCATTGGACAACATGTCTTCAACCTGGCCTTCTGGAGTATCACTTCAAGAGGTTCCTCCGACTTCAGTGCAGTCTTCCCACACTCCTGCTGCAACAGGGTCTCAAGGACACATCCCATCGGCAGCCAAGCCTGAAATTCCGTCTTTACCAGAAGCTGCAGCTCCTGAAAAAGTTACAAAGGATGGATCACCGGGGGCTCCTCCTATCCAAGTTTCTCAAGCAGATGTTATCATGCCTGATCTTTCACCGATAAATGAGACAGAAACAAGAAGTATTATTGAAATGCCCCAAAAGAATTATATGGGGCCAGAGAAAGGGGACGAGGGATTTATGGATCCTAATTCACTGGGAGTTAGTGGGTCATTTCCCATTGATTTGGAAGGTTTTTCACCCGGAATAGACATCGATGATTTCTTATCCAATCCTTCTATCTGGGATGATATCTTACAAACTCCAGGTCCCGTGGATATTGAGGAAGATGTTGTCGAAGATTCCAATGGTAATGAGGTGGAAACAATAGAAACTGGATGGGATAAAAGTCAACACATGGATCACCTTACTGAGCAGATGGGTCTTCTTTCTTCAGACGCACAAAAAGAACTTTGA 1515 0.4713 MTGVSTSGGDHGGGVPVPAPAPAPMPSANTPPPFLSKTYDMVDDPSTDPIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEGFLRGQKHLLRTITRRKPAHGHTHQQAPQSNGQTSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATDGKMQTMAQRLHGMEQRQQQMMSFLAKAVQSPGFFAQFVQHQNENNRRITEVNKKRRLRPEGTFETEPATVPDGQIVKYQPMMNDVAKSMLKQIIKWDASHVDALSKNSDNYLIADGSSSALDNMSSTWPSGVSLQEVPPTSVQSSHTPAATGSQGHIPSAAKPEIPSLPEAAAPEKVTKDGSPGAPPIQVSQADVIMPDLSPINETETRSIIEMPQKNYMGPEKGDEGFMDPNSLGVSGSFPIDLEGFSPGIDIDDFLSNPSIWDDILQTPGPVDIEEDVVEDSNGNEVETIETGWDKSQHMDHLTEQMGLLSSDAQKEL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272015g00008 504 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00008 504 MobiDBLite consensus disorder prediction 17 31 - -
Stsc272015g00008 504 Coils Coil 152 179 - -
Stsc272015g00008 504 MobiDBLite consensus disorder prediction 1 41 - -
Stsc272015g00008 504 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00008 504 Gene3D - 27 124 IPR036388 -
Stsc272015g00008 504 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00008 504 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00008 504 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00008 504 MobiDBLite consensus disorder prediction 314 348 - -
Stsc272015g00008 504 MobiDBLite consensus disorder prediction 314 338 - -
Stsc272015g00008 504 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 303 IPR027725 -
Stsc272015g00008 504 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00008 504 SUPERFAMILY "Winged helix" DNA-binding domain 29 123 IPR036390 -
Stsc272015g00008 504 FunFam Heat shock transcription factor 1 27 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272015g00008 Stsc-Chr272015 31365 34195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272015g00008 4 497 HSF AT1G32330 51.362 4.87e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc272015g00008 HSF_DNA-bind 9.5e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272015g00008 K09419 - gmx:100815121 720.309