Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272015g00006 ATGGATGCGAGTACTAGCGGTGGAGACGGCGGCGGAAGCTCTAACGGCACCACGCCGGCGCCGGCACCGATTCCGAACGCGAACGCGCCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTGGACGACTCGTCAACGGACGCAGTCGTGTCGTGGAGCGCTACGAACAATAGCTTTGTGGTTTGGAACCCGCCGGAATTCGCGAGAGACCTTTTGCCGAAATACTTCAAGCACAATAACTTTTCCAGCTTCGTTAGGCAGCTCAACACTTATGGTTTTAGGAAGGTTGATCCAGATCGATGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTCGGAATATAACACGAAGAAAACCTGCCCATGGTCATAATCATCAACAATCTCAGCAATCACATGTACAAAATTCGTCAGTAGGGGCATGTGTAGAAGTTGGTAAGTTTGGGCTCGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAAAATGTGCTCATGCAGGAACTTGTCAGGCTGAAACAGCAACAACAGACCACTGATGGCCAGCTGCAAACAATGGTTCAACGCCTTCAGGGCATGGAGCAAAGACAGCAACAAATGATGTCATTCCTTGCTAAAGCTGTTCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAAAATGACAATAATAGGCGTATAACTGAAGTCAACAAAAAGCGCCGGCTCAAGCAAGAAGGCATTGCTGAAGCTGACAGTGCTTCTGCTCCTGATGGGCAAATTGTTAGATATCAACCTCCGATTAACGATTCAGCAAAAGCAATGCTAAGACAGATCATGAAATGGGATACTTCTCATGCAGAATCTTTTAGTAAAAATCCTGATAATTACTTGATTGGTGATGGTTCGTCATCATCATCTGGTGCAATGGATAGTGGCAGCTCTTCAAGCTGGACCTCTGGTGTAACACTTCAGGAGGTCCCTCCAACTTCAGTGCAGTCTTCTCATATTCCAATTATGCCAGGGGCTCCAGGGCATGTACCTTCAGCTGCCAAACCTGAAATTCAATCTTTACCGCAAGCTGGAGCTCCTGAAAAGGTTTCCAATGATGGAGCATCTGGCATACCTTCTATCCATGTTCCTCAAGCAGATGTCATAATGCCTGATCTTGCACCAATAGATGAAATAGAGTCTGGAAGTATGCTTGGTATTCCTGAAGATAATTATATGGCTCCCGAAGCTGGTGATGAGGGATTCATGGATCCTGATTCATTGGGGGTTAGTGGATCATTTCCCCTTGATTTCGAAGGAATTTCACCTGATGCAGACATTGATGACTTGTTAGGAAATCCTTCTATTTGGGATGATCTTTTGCAAACCCCAGCACAAGAGGATACTGATGTTGAAGCTTCCAAAGATAATGAGATGCAACCAGCTGAAAATGGTTGGGATAAAACTCAACATTTGGATCAACTTACAAAGCAGATGGGTCATCTTTCTTCTGAGGCAAAATAG 1506 0.4588 MDASTSGGDGGGSSNGTTPAPAPIPNANAPPPFLSKTYDMVDDSSTDAVVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGHNHQQSQQSHVQNSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLKQQQQTTDGQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDNNRRITEVNKKRRLKQEGIAEADSASAPDGQIVRYQPPINDSAKAMLRQIMKWDTSHAESFSKNPDNYLIGDGSSSSSGAMDSGSSSSWTSGVTLQEVPPTSVQSSHIPIMPGAPGHVPSAAKPEIQSLPQAGAPEKVSNDGASGIPSIHVPQADVIMPDLAPIDEIESGSMLGIPEDNYMAPEAGDEGFMDPDSLGVSGSFPLDFEGISPDADIDDLLGNPSIWDDLLQTPAQEDTDVEASKDNEMQPAENGWDKTQHLDQLTKQMGHLSSEAK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272015g00006 501 MobiDBLite consensus disorder prediction 298 331 - -
Stsc272015g00006 501 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Stsc272015g00006 501 MobiDBLite consensus disorder prediction 1 22 - -
Stsc272015g00006 501 MobiDBLite consensus disorder prediction 477 501 - -
Stsc272015g00006 501 Gene3D - 26 123 IPR036388 -
Stsc272015g00006 501 Coils Coil 151 178 - -
Stsc272015g00006 501 MobiDBLite consensus disorder prediction 456 501 - -
Stsc272015g00006 501 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 307 IPR027725 -
Stsc272015g00006 501 MobiDBLite consensus disorder prediction 1 31 - -
Stsc272015g00006 501 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00006 501 FunFam Heat shock transcription factor 1 26 123 - -
Stsc272015g00006 501 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00006 501 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00006 501 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00006 501 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272015g00006 501 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272015g00006 Stsc-Chr272015 26486 30441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272015g00006 1 500 HSF AT1G32330 53.462 4.37e-173 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc272015g00006 HSF_DNA-bind 7.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272015g00006 K09419 - gmx:100815121 706.057