Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc272012g00001 | ATGGAGCATGTATCAGAAAAACGATTTCCTCTCAATGCCAAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGTGTTAGTGCCTCAGTATACAGGGCTCTCTGCATTCCACTCAATGAGATAGTTGCCATCAAGGTTCTTGATCTCGAGAAGTGCAACAATGATTTGGATGGGATCCGGAGGGAGGTACAGACCATGAGCTTGATTGACCATCCTAATCTTTTACGAGCACATTGCTCTTTTACTGCTGGACATAATCTCTGGGTTGTGATGCCGTACATGGCTGGGGGTTCTTGCCTTCACATAATGAAATCTGCCTTTCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTACTCCGTGAAGTTCTCAAAGCACTAGTCTATCTTCATGACCATGGTCACATACACAGAGATGTTAAGGCTGGGAATATTTTGATTGATTCTAATGGTGCAGTCAAACTAGCTGACTTTGGAGTGTCAGCGTGTATGTTTGATACTGGAGATAGGCAACGGTCAAGAAATACTTTTGTTGGAACACCCTGCTGGATGGCTCCTGAAGTTATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGCATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAATATCCACCAATGAAAGTTTTGCTTATGACTTTGCAAAATGCCCCTCCGGGTCTTGACTATGAAAGAGATAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTGAAAGACCCTAAGAAGCGTCCAAGCTCAGATAAGCTTTTAAAGCACCACTTTTTCAAACATGCACGCCCTGTTGAATATCTTGCTCGCACAATTTTAGAGGGCCTTGCTCCTTTGGGAGATCGCTTTAGAACGCTGAAGGCAAAAGAGGCAGATTTGCTGGTGCAGAACAAGGCTCTTTATGAAGATAAGGATCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAGGATTTAAAAAGTCAAGCTGCCCTCATTCCAGATGATGGAACGCCAAATGCAGAAGAGCCAGATATAGACAAGAAGCAAAAGGATAGATCTGATGATGGAAGGGTCCCAGCAGATGGACTATCTTCGGTATCAGCTAATCATCCAGATGTTGCATCCAGACTAGACAAAGAGGATGGCTTTAACAATATTCAGGATTTGGAGAGTTCACTTCCTTCGTTTCCTAGTAAACCTCTTCAAGCACTTAAAGGTTGCTTTGATGTCGGTGAGGAAGATGTCACTAATACCAGTCCAAGAGATTTGGATACTGATTCTGGAAGAAGTAATGAAACTTCTGGACCAAGTGGTTCATTACCACAAAATGCTATAGCTCAACAAAAAAAGTTTTTGAGTGGTTCTTTGCTGCCTGATACCTTTCCTTCTTCCAAAAAGGTTATCGATGGTGATAGGGACTATCTACAAACAAAATATTCTTCTGAGCGGAACCATAGCGGTCCGTTATCATATCGGCAGAAGAGGGATAACACCAACCATCCTCTGGTTGATGACGCATCCGAAGGAGCCATTGTCCAGCGTAAGGGGCGCTTTAAGGTCACATCAGCAGATATCAGTCCAATGGGTCAGGCAAACTGCGCTTATGGCCCAGTTAGTGTAGCTCCTGCTAGTCCACCAAATCAGAATCCCGTGGCTGCTGCTATTCTTCCATCACTGCAATGCATCTTACAACAGAACAGTTTTCAGAGGGAAGAACTTATTAAGCTAATAAAGTATGCAGAGCAATCTTATGGCAAGAATGCAGAATCAGCCGACGCAGTTGAATCTTTGCAGGCACCACCGGTGACGAGTAGGGAGCGAGACCTGTATTTTCAGGTTGTTCAACTCCAACAGAGTCTTGGGACCCTTGTTGAGGAATTGCAGAGACAAAAGATGAAAAACCATCAGTTAGAGAAACAGTTGAGCTCAATGGCCAGCAAACTTGAAAAGTGA | 2010 | 0.4294 | MEHVSEKRFPLNAKDYKLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNLLRAHCSFTAGHNLWVVMPYMAGGSCLHIMKSAFPEGFEEPVIATLLREVLKALVYLHDHGHIHRDVKAGNILIDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSDKLLKHHFFKHARPVEYLARTILEGLAPLGDRFRTLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIPDDGTPNAEEPDIDKKQKDRSDDGRVPADGLSSVSANHPDVASRLDKEDGFNNIQDLESSLPSFPSKPLQALKGCFDVGEEDVTNTSPRDLDTDSGRSNETSGPSGSLPQNAIAQQKKFLSGSLLPDTFPSSKKVIDGDRDYLQTKYSSERNHSGPLSYRQKRDNTNHPLVDDASEGAIVQRKGRFKVTSADISPMGQANCAYGPVSVAPASPPNQNPVAAAILPSLQCILQQNSFQREELIKLIKYAEQSYGKNAESADAVESLQAPPVTSRERDLYFQVVQLQQSLGTLVEELQRQKMKNHQLEKQLSSMASKLEK | 669 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc272012g00001 | 669 | ProSiteProfiles | Protein kinase domain profile. | 16 | 277 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc272012g00001 | 669 | Gene3D | Phosphorylase Kinase; domain 1 | 5 | 92 | - | - | |
| Stsc272012g00001 | 669 | Coils | Coil | 639 | 666 | - | - | |
| Stsc272012g00001 | 669 | FunFam | serine/threonine-protein kinase BLUS1 isoform X1 | 97 | 330 | - | - | |
| Stsc272012g00001 | 669 | MobiDBLite | consensus disorder prediction | 497 | 522 | - | - | |
| Stsc272012g00001 | 669 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524 | |
| Stsc272012g00001 | 669 | MobiDBLite | consensus disorder prediction | 499 | 515 | - | - | |
| Stsc272012g00001 | 669 | MobiDBLite | consensus disorder prediction | 359 | 377 | - | - | |
| Stsc272012g00001 | 669 | MobiDBLite | consensus disorder prediction | 349 | 397 | - | - | |
| Stsc272012g00001 | 669 | FunFam | Serine/threonine-protein kinase BLUS1 | 5 | 93 | - | - | |
| Stsc272012g00001 | 669 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 299 | IPR011009 | - | |
| Stsc272012g00001 | 669 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 6 | 650 | IPR047173 | GO:0043539 | |
| Stsc272012g00001 | 669 | SMART | serkin_6 | 16 | 277 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc272012g00001 | 669 | Pfam | Protein kinase domain | 16 | 277 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc272012g00001 | 669 | Gene3D | Transferase(Phosphotransferase) domain 1 | 97 | 310 | - | - | |
| Stsc272012g00001 | 669 | MobiDBLite | consensus disorder prediction | 431 | 461 | - | - | |
| Stsc272012g00001 | 669 | CDD | STKc_OSR1_SPAK | 14 | 277 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc272012g00001 | Stsc-Chr272012 | 3429 | 12468 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc272012g00001 | 1 | 666 | MAP Kinase Kinase Kinase Kinase | AT5G14720 | 66.230 | 0.0 | 923 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | STE_STE20-Fray | Stsc272012g00001 | Pkinase | 5e-59 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc272012g00001 | K08835 | - | gmx:100778837 | 1096.65 |