Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272009g00004 ATGGGAAATGGGGAACCACCCGTGAGAAATCGGGAATGGAGACGGGGCAAAAATTCTCCCGGCGAGAAATGGGGTGGGGACAGGAAAAGATTTTGGGATAAGGACGGGGAGCGCAATGACGATGATGATGATGAGATAACTGAAGAGGAACTTGCCTTGTTGGAACGTGAGTTAGAAGGTGCGTTGGGGGAATTTGATGCAGAAACCTTAAATCCGGATTTAATTCATGCTGAAACTGATGCTGGTGATAGTGAAGAAGAAGAAGAAGATGATGAAGAAGAAGACGAAGAAGATGAAGAAGATGAAGAAGACGGTGTGCCTATGCTTAGAACCTGGCAAATGAAGAAATTGGCTAGGGCTTTGAAAGCTGGCCGCAGAAAAACCAGTATAAAAAATCTTGCTGCTGATCTTTGTCTTGATAGGGCTTATGTTATTGAATTACTCCGCAACCCTCCTCCGAATCTTTTGATGATGAGTTTATCAATTCCTGATGAACCTACACCAAAAGAAATATCCGTTGAGACTAAACCTAGTGAGATTGTTCTCGAAGAAACACGTACAGATCCTGTAGAAGCTGGAAACAAGGCCAACTTACCAGTTCATGTCATGCAACAAAAATGGTCTGCGCAAAAGAGATTGAAAAGGGCCCAAGTTGACACTCTGGAAAAGGTTTATAGGAGATCGAAGCGACCCACTAATGCAATGATAAGTAGTATAGTGCATGTGACCAACATTCCTCGGAGAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAAGAGGGGGTTCCAGAGAATCGTGTTCCGTACCAGCGCCCTGTATCAGAAACTAGTTGA 837 0.4385 MGNGEPPVRNREWRRGKNSPGEKWGGDRKRFWDKDGERNDDDDDEITEEELALLERELEGALGEFDAETLNPDLIHAETDAGDSEEEEEDDEEEDEEDEEDEEDGVPMLRTWQMKKLARALKAGRRKTSIKNLAADLCLDRAYVIELLRNPPPNLLMMSLSIPDEPTPKEISVETKPSEIVLEETRTDPVEAGNKANLPVHVMQQKWSAQKRLKRAQVDTLEKVYRRSKRPTNAMISSIVHVTNIPRRRVVKWFEDKRAEEGVPENRVPYQRPVSETS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272009g00004 278 MobiDBLite consensus disorder prediction 1 106 - -
Stsc272009g00004 278 ProSiteProfiles 'Homeobox' domain profile. 204 264 IPR001356 GO:0003677
Stsc272009g00004 278 CDD homeodomain 207 259 IPR001356 GO:0003677
Stsc272009g00004 278 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 41 271 - -
Stsc272009g00004 278 SUPERFAMILY Homeodomain-like 207 269 IPR009057 -
Stsc272009g00004 278 MobiDBLite consensus disorder prediction 80 105 - -
Stsc272009g00004 278 Pfam Homeodomain 212 260 IPR001356 GO:0003677
Stsc272009g00004 278 MobiDBLite consensus disorder prediction 38 52 - -
Stsc272009g00004 278 Coils Coil 44 64 - -
Stsc272009g00004 278 MobiDBLite consensus disorder prediction 8 37 - -
Stsc272009g00004 278 MobiDBLite consensus disorder prediction 258 278 - -
Stsc272009g00004 278 SMART HOX_1 210 268 IPR001356 GO:0003677
Stsc272009g00004 278 Coils Coil 82 102 - -
Stsc272009g00004 278 Gene3D - 209 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272009g00004 Stsc-Chr272009 14135 18598 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc272009g00004 Homeodomain 3.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272009g00004 - - ccaj:109796293 293.508