Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272007g00007 ATGGGTGCAAATGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTGTGCAACCCAGTTCAGTCTCGTAGTAAAATGGGTGAACTTCTTTTTGAGACATATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCAGCATTCAGCTATAAATATAACCAGCAACAAGGAATTTGTAATAGAGATGGTCTGGCAATGTGTCCTGGATTTACTACAACCCATCTGATTCCGTTTGTTGATGGCGAACCTATGTATAAAGGATGCTGCCGTACCAACATCGGTGGATTTCACTTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATATGGGAAGATTTACTTGGGAAAAAGTTGAAGACCTGAAGATGGAACATTGTTATATTGCACAGGACTATGTTTCTGAAGCCAGGTTGTTTCAGAAAGGAACCAAAGAGGCTGAAGAAAAAACCAGATTGTGGCAGCTACCTTGGGTTCCACCTCCAACTGAGGAGCCTCCTTCTGAAGAAGAGATTGCAAGAAAGGCGGCTATAAAAGAGAAACAAGGTCAAAGGCTACGAGAAATGGCTGAGGCAAAGAGATCATCTAAAATAAATGAACTGGAAAATGAATTGCATGGTTTGGAGTTCCTTTTAAATCAGCTTGAAAAAGTTGCAGAGAGTGATGTTCCGTCTTTCCTAGCAGAAACTGGTTATGTCTCTAGGCAAGAGATAGAATCTGCCCGTAATAGAACTACACAATCCTTACGGAAAGCAAAAGGAGAACCAAAGAGTGAACAAACAGAAGCTGAAAGGGCTGATTCCTCAAATAATGAGAAGTATTCTCTTGTTAATGTACCTGATGACATGCTGACACCAGAACAGCTTATTGAAAAGAAGAAACAGTTGGCCCTCAAATCCATGTCTGAAGGGCGTCAGCGACTAAAACAGAAGCGCCAAGAAGCGGAATTAGAACGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCTTGGAGAACCCAGAGCTCTACTTGGAACAATTGCATGCTAAATACAAAGACCTTTCAGAGAAAATTGATCAACGAAAACGACTCAAGACAAATGGAGGTCATACAAATGGGAATAACTTATCTGGTGGCGTTGGTCGTGGTGAGAGATTGAATGCTGCTCAAAGGGAAAGAATGCGCCTGTTGACAACAGCTGCTTTTGATCGTGGTAAGGGTGAGGATACATTTGGCGCCAAAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAGAGACAATGATGATGATGATGAGGGACCAGATGAGGATGATGCAGAATTAGCCCGCATCTCTTCAAGATTACAGGACTTGGATCCAACATTTGTGCCCAAGTTAGAAGCAGGTACCTCTCAAAATGCTGAGGTGCCTCGTGTTCGTCCTCTCACTCAAGAAGATTTCCAGATCGTATTTGGGGTAGAAAGGTTCAGATGCCCCGAAATATTATTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGCTTAGATGAGATGGCTGGAGTTTCCATGAGAAGGTTACCATTCAAGGATGAAAGCCTGCAATCGAGACTGACTAGTTCCATATTATTGACTGGTGGAAGTTCTCTTTTCCCTGGTATCGTAGAACGCCTAGAAGCTGGAATTCGGATGATTAGACCTTGTGGATCACCTATAAAGATAGTTAGAGCACTGGATCCAGTGATGGATGCATGGCGTGGGGCTGCTGCCTATGCATCAGGCCCGCAATTCCATACACAAACTTTCAGTAAGATGGATTATTATGAAAAGGGTGAGGACTGGCTTCGCAGTTATCAACTGAAATACTCGTTATGA 1848 0.4253 MGANGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGICNRDGLAMCPGFTTTHLIPFVDGEPMYKGCCRTNIGGFHLTDYLKQLLSLKYPYHMGRFTWEKVEDLKMEHCYIAQDYVSEARLFQKGTKEAEEKTRLWQLPWVPPPTEEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLNQLEKVAESDVPSFLAETGYVSRQEIESARNRTTQSLRKAKGEPKSEQTEAERADSSNNEKYSLVNVPDDMLTPEQLIEKKKQLALKSMSEGRQRLKQKRQEAELERERKQQLEEEKRLENPELYLEQLHAKYKDLSEKIDQRKRLKTNGGHTNGNNLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEGPDEDDAELARISSRLQDLDPTFVPKLEAGTSQNAEVPRVRPLTQEDFQIVFGVERFRCPEILFNPNWIGVDQVGLDEMAGVSMRRLPFKDESLQSRLTSSILLTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAAAYASGPQFHTQTFSKMDYYEKGEDWLRSYQLKYSL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272007g00007 615 Gene3D - 9 43 - -
Stsc272007g00007 615 SUPERFAMILY Actin-like ATPase domain 9 52 IPR043129 -
Stsc272007g00007 615 Coils Coil 202 222 - -
Stsc272007g00007 615 Gene3D - 575 603 - -
Stsc272007g00007 615 Gene3D - 505 574 - -
Stsc272007g00007 615 MobiDBLite consensus disorder prediction 248 273 - -
Stsc272007g00007 615 Coils Coil 302 336 - -
Stsc272007g00007 615 FunFam ARP5 actin-related protein 5 homolog 505 574 - -
Stsc272007g00007 615 PANTHER ACTIN 9 603 IPR004000 -
Stsc272007g00007 615 Coils Coil 342 362 - -
Stsc272007g00007 615 FunFam Actin-related protein 5 96 150 - -
Stsc272007g00007 615 Gene3D Actin; Chain A, domain 4 100 154 - -
Stsc272007g00007 615 FunFam actin-related protein 5 45 99 - -
Stsc272007g00007 615 Gene3D Actin; Chain A, domain 4 436 504 - -
Stsc272007g00007 615 Pfam Actin 480 607 IPR004000 -
Stsc272007g00007 615 Pfam Actin 8 161 IPR004000 -
Stsc272007g00007 615 SMART actin_3 1 611 IPR004000 -
Stsc272007g00007 615 SUPERFAMILY Actin-like ATPase domain 63 607 IPR043129 -
Stsc272007g00007 615 FunFam Putative actin-related protein 5 575 603 - -
Stsc272007g00007 615 MobiDBLite consensus disorder prediction 303 332 - -
Stsc272007g00007 615 Gene3D - 45 99 - -
Stsc272007g00007 615 MobiDBLite consensus disorder prediction 242 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272007g00007 Stsc-Chr272007 47781 51152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272007g00007 481 602 Cytoskeleton Gene Families AT5G09810 36.066 2.70e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272007g00007 K11672 - gmx:100808396 1040.02