Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272007g00001 ATGGGTAGCTGCTTCAGTGCCATCCGGATCAAAGCTGAAAGCCCTCCACGCGATGGTCTTAATTCAAAGAATGGAAGCATAGAAGAGAAGGTTTTAAGTGGCTTAAGCAGCAAGGTATCTTCTCGTTCCATGCTTATATCTCCTCAGACAGAGGGCGAGATTCTGCTATCCACCAATTTAAAGAACTTCAGCTTCATTGAGCTAAGAACTGCTACAAGGAACTTTCGTCCGGATAGTGTGGTTGGCGAAGGTGGGTTCGGTTCTGTATTTAAGGGTTGGATCGATGAGCAGACGCTCGAGCCCACAAAACCAGGGACGGGACTTGTCATTGCAGTGAAGAGGCTAAATCAAGAGAGCACACAAGGACACATTGAATGGCTGACAGAAATCAACTACCTGGGTCAGCTGGATCATCCTAATCTTGTGAAACTGATTGGTCACAGCTTAGAGGATGATCACAGGATCTTGGTATATGAGTTTTTGACCAAAGGCAGTTTAGATAATCATTTGTTTAGGAGAGCTTCTTATGTTCGCCCTCTTTCTTGGGACGTACGCATGAATATCGCGCTTGACGCAGCTAAGGGCCTTGCATTTCTTCACAGCGAAGAAGTAGATGTCATATACCGAGACTTCAAGACTTCCAATATCTTGCTTGATTCGAATTATCATGCAAAACTCTCTGATTTTGGATTGGCAAAAGATGGACCAGAAGGTGACAAGAGCCATGTCTCTACAAGGATAATGGGAACATTTGGCTATGCAGCTCCTGAATATATAGCCACAGGTCACTTAACCAAGAAGAGTGATGTATACAGTTTCGGAGTAGTGCTGCTCGAAATCATGTCAGGGAAACGTGCACTAGATAAGAACAGACCAACAGGGGAGCATAATTTGGTGGACTGGGCCAAGCCATTACTAGTCAGCAAACGAAAAATCTCACAGGTGATGGATTCTCGTTTAGACGGTCAATATCCGTCGCGCGAGGCAATGAAAGTAGCAGCTCTTGCAATCAAATGCCTCTCTGCTGAACAGAAATTTAGGCCTACCATGGATGAGGTGGTAAGATCCTTGGAGCAACTCAAGGATTCTGAAGACATAACAGCAAGTGGAGTGGAAAAATCTCAAGATCATGGTAATAGTTCAAGATCAAATAGAAATGGTTCAAAACAACATAGAAGAAGTAACAACGAATCTTTAAATGGAGAAGGTAGTACTAATCAGACACCATCATCAGCTTCTCCTATTCACACTTAG 1254 0.437 MGSCFSAIRIKAESPPRDGLNSKNGSIEEKVLSGLSSKVSSRSMLISPQTEGEILLSTNLKNFSFIELRTATRNFRPDSVVGEGGFGSVFKGWIDEQTLEPTKPGTGLVIAVKRLNQESTQGHIEWLTEINYLGQLDHPNLVKLIGHSLEDDHRILVYEFLTKGSLDNHLFRRASYVRPLSWDVRMNIALDAAKGLAFLHSEEVDVIYRDFKTSNILLDSNYHAKLSDFGLAKDGPEGDKSHVSTRIMGTFGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDKNRPTGEHNLVDWAKPLLVSKRKISQVMDSRLDGQYPSREAMKVAALAIKCLSAEQKFRPTMDEVVRSLEQLKDSEDITASGVEKSQDHGNSSRSNRNGSKQHRRSNNESLNGEGSTNQTPSSASPIHT 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272007g00001 417 MobiDBLite consensus disorder prediction 397 417 - -
Stsc272007g00001 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Stsc272007g00001 417 Gene3D Transferase(Phosphotransferase) domain 1 161 385 - -
Stsc272007g00001 417 SUPERFAMILY Protein kinase-like (PK-like) 50 357 IPR011009 -
Stsc272007g00001 417 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272007g00001 417 CDD STKc_IRAK 81 360 - -
Stsc272007g00001 417 Pfam Protein tyrosine and serine/threonine kinase 79 357 IPR001245 GO:0004672|GO:0006468
Stsc272007g00001 417 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Stsc272007g00001 417 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Stsc272007g00001 417 PANTHER OS01G0588500 PROTEIN-RELATED 43 361 - -
Stsc272007g00001 417 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Stsc272007g00001 417 MobiDBLite consensus disorder prediction 364 417 - -
Stsc272007g00001 417 FunFam Probable serine/threonine-protein kinase PBL8 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272007g00001 Stsc-Chr272007 1985 4060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272007g00001 3 365 Glycoside Hydrolase AT3G07070 42.706 3.97e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc272007g00001 PK_Tyr_Ser-Thr 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272007g00001 - - var:108326804 588.571