Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272006g00005 ATGGACTTGAACGATGGCCGAGGCGGAGACTACGCCCGAATGGTAGAGTTGCAACAAGTAACAGCTCAAAACGATGAATCCAAGCCTACTTCCAGTGTTCCAAAGGAGCGAAGAAGCTCACAAAGGATCAGCACTCCCCAAAGTCCTTCAGTGAGCTTCAAATCAAGCACACATGGAACTCCAATGTTCACTCCCTTCAGCCAGGGACTTTCCATGGGAACTCCTTACTCCTACACAGTTCAATATGATCCTGATGATGATAGCTTCGATGATAGCCCAAAACGACCCCATCATCCGGCACCTTCGCCGTGGCGATTGCTGAAAATGAATGCTCCTGAGTGGGGAAGAGCAATGCTTGGAGTCTTGGGAGCTGTAGGCTCTGGAGCAGTGCAACCAATAAACGCATACTGCGTTGGATTGCTAATTTCCATCTATTTCGACACTGATAATATGAAATCTAAAACTCGGCGCTTAGCTCTGATTTTCTTGGGGATCGGTGTGTTTAACTTCTTCACAAGCATCCTCCAGCACTACAATTTCGCCGTCATGGGCGAGAGGCTGACCCGGAGAATCCGGGAGATGCTTCTTGAAAGAATGATGAAGTTTGAGATCGGATGGTATGACATGGAAGAGAACACGAGCGCAGCGATCTGCGCTCGGTTATCTTCTGAAGCGAACTTAGTCCGGTCGCTCGTTGGCGACCGGATGTCTTTGTTATCACAGGCAATATTCGGTTCTCTGTTTGCCTACGTGCTCGGCCTTGCGCTGACATGGCGGCTCTCCCTTGTGATGATTGCGGTGCAGCCAATCGTCATCGGAAGCTTCTACGCGCGGAGTGTTTTGATGAAAAGCATGGCGGAAAAGGCGCGAAAGGCACAAAGAGAAGGAAGCCAGCTGGCAAGTGAGGCAGTTATAAATCACAGAACCATAACGGCTTTTGGATCTCAGAAAAGAATGACGTCACTCTTTCAGTCCACACTGTTAGCTCCTAAGCAGGAGAGCATTAGGCTTTCGTGGATTTCGGGTTTCGGACTTTTCAGCTCCCAATTCTTTAACACTGCTTCGACGGCGTTGGCATACTGGTACGGTGGGAGGCTCCTTGTAAATGGTGACATCAATCCCAAACATCTGTTCCAAGCGTTCTTGATTTTGCTCTTCACTGCTTACATCATTGCCGAGGCTGGAAGCATGACAAATGATATCTCGAAAGGAAACAGCGCCGTCGGGTCGGTTTTCGCGATACTGGACCGGAAAACCGAGATTGATCCGGAGACGTCGTGGGGATCGGAGAAGAGAAGGAAGATTAGGGGGAAAGTTGAGCTTAAGAGTGTGTTCTTTTCATATCCAACTAGGCCTGATCAGATGGTGTTTAAGGGCTTGTGTCTTACGGTTGAATCTGGGAGCACAGTAGCACTAGTTGGTCATAGTGGGAGTGGTAAATCCACTGTTATTGGTCTTGTTGAGAGGTTTTATGATCCTTTGAAGGGAAGTGTGTGCATAGATGAACAAGATATCGTGTCTTATAATTTGAGGATGCTGAGGTCACATATTGCATTGGTGAGTCAAGAGCCAACTCTTTTTGGTGGAACCATTAGAGAGAACATTGCTTATGGGAAAGAAGACGCTACTGAATCTGAGATAAGAAGGGCTGCTGCTATGGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGAGACATATTGTGGAGAAAGAGGGGTTCAGTTATCAGGAGGGCAGAAACAAAGAGTAGCATTAGCAAGGGCCATACTAAAGAATCCAGCAATATTGCTTCTTGATGAGGCCACAAGTGCATTGGACAGTGTGTCAGAGAATTTAGTCCAAGAAGCACTTGAGAAGATGATGGTTGGAAGAACATGCATTGTTGTCGCACATAGGCTATCTACCATTCAAAGATCCAACTCCATTGCTGTGATTAAGGGTGGCAAGGTTGTGGAACAAGGTTCACATAATGAGTTAATTTCCCTTAATGGGGCATACTATTCTCTTATTAAACATCAAAATGCTAACTCCCCTAGATAA 2049 0.4651 MDLNDGRGGDYARMVELQQVTAQNDESKPTSSVPKERRSSQRISTPQSPSVSFKSSTHGTPMFTPFSQGLSMGTPYSYTVQYDPDDDSFDDSPKRPHHPAPSPWRLLKMNAPEWGRAMLGVLGAVGSGAVQPINAYCVGLLISIYFDTDNMKSKTRRLALIFLGIGVFNFFTSILQHYNFAVMGERLTRRIREMLLERMMKFEIGWYDMEENTSAAICARLSSEANLVRSLVGDRMSLLSQAIFGSLFAYVLGLALTWRLSLVMIAVQPIVIGSFYARSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFGSQKRMTSLFQSTLLAPKQESIRLSWISGFGLFSSQFFNTASTALAYWYGGRLLVNGDINPKHLFQAFLILLFTAYIIAEAGSMTNDISKGNSAVGSVFAILDRKTEIDPETSWGSEKRRKIRGKVELKSVFFSYPTRPDQMVFKGLCLTVESGSTVALVGHSGSGKSTVIGLVERFYDPLKGSVCIDEQDIVSYNLRMLRSHIALVSQEPTLFGGTIRENIAYGKEDATESEIRRAAAMANAHEFISGMKDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHRLSTIQRSNSIAVIKGGKVVEQGSHNELISLNGAYYSLIKHQNANSPR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272006g00005 682 Gene3D - 429 681 IPR027417 -
Stsc272006g00005 682 Gene3D ABC transporter type 1, transmembrane domain 63 426 IPR036640 GO:0005524|GO:0016020
Stsc272006g00005 682 Pfam ABC transporter 458 606 IPR003439 GO:0005524
Stsc272006g00005 682 MobiDBLite consensus disorder prediction 82 104 - -
Stsc272006g00005 682 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 119 403 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272006g00005 682 MobiDBLite consensus disorder prediction 1 66 - -
Stsc272006g00005 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 676 IPR027417 -
Stsc272006g00005 682 CDD ABC_6TM_Pgp_ABCB1_D2_like 107 421 - -
Stsc272006g00005 682 FunFam Putative ABC transporter B family member 8 80 426 - -
Stsc272006g00005 682 MobiDBLite consensus disorder prediction 36 66 - -
Stsc272006g00005 682 SUPERFAMILY ABC transporter transmembrane region 103 422 IPR036640 GO:0005524|GO:0016020
Stsc272006g00005 682 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 114 672 IPR039421 -
Stsc272006g00005 682 Pfam ABC transporter transmembrane region 119 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272006g00005 682 SMART AAA_5 466 658 IPR003593 GO:0016887
Stsc272006g00005 682 CDD ABC_MTABC3_MDL1_MDL2 439 676 - -
Stsc272006g00005 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 439 675 IPR003439 GO:0005524
Stsc272006g00005 682 FunFam ABC transporter B family member 4 429 680 - -
Stsc272006g00005 682 ProSitePatterns ABC transporters family signature. 578 592 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272006g00005 Stsc-Chr272006 42724 46062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272006g00005 119 678 Calmodulin-binding Proteins AT2G36910 38.028 1.48e-114 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272006g00005 K05658 - gmx:100788127 1093.57