Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272005g00012 ATGTCAGCCACAGTAATTGAAGGGAATGGTGCAGTTACTGGCCACATAATCTCAACCACAATTGGTGGCAAAAATGGTGAACCTAAACAGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAGTCGTTTTCCAGGCAAAATGCTTGGAGACTGGGGAGGCGGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGGTACAAAAATCGTGAGCTTCAATTGATGCGCTTGATGGATCATCCTAACGTAATTTCTCTGAAGCACTGTTTCTTCTCTACAACAAGCAAAGATGAACTTTTCCTGAACTTGGTAATGGAATATGTCCCTGAGACGATGTACCAGGTTCTAAAGCACTACAGTAGTATGAACCAGAGAATGCCCTTAATTTATGTGAAATTATATACATATCAAATCTTTAGGGGACTAGCATATATCCATACTGTTCCTCAAGTTTGCCATAGGGATGTGAAGCCCCAAAATCTTTTGGTTGATCCTCTCACTCATCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAATCCAATATTTCTTACATATGTTCGCGTTACTATCGGGCCCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTTCTTGCCGAACTCCTTCTAGGCCAGCCATTATTTCCCGGAGAAAATCAAGTAGACCAACTTGTGGAAATTATCAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACTCTAATTATACAGATTTTAGATTCCCCCAGATTAAAGCTCATCCTTGGCATAAGATTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATACTCACCAAGTCTTCGTTGTTCCGCCCTGGAAGCATGTGCGCATCCATTCTTTGATGAGCTTCGTGAGCCAAATGCTCGACTACCTAATGGCCGTCCACTGCCTCCACTTTTCAACTTCAAACAGGAAATAGCTGGAGCCTCCCCTGAATTGATCAACCGACTCATCCCGGAGCATGTAAGGAGGCAAAGTGGCCTTGGCTTCCCCCATCCAAGTAGCACACAAATCTAA 1131 0.435 MSATVIEGNGAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYQVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPQVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNSNYTDFRFPQIKAHPWHKIFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQEIAGASPELINRLIPEHVRRQSGLGFPHPSSTQI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272005g00012 376 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 363 - -
Stsc272005g00012 376 CDD STKc_GSK3 29 321 IPR039192 -
Stsc272005g00012 376 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Stsc272005g00012 376 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Stsc272005g00012 376 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Stsc272005g00012 376 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272005g00012 376 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Stsc272005g00012 376 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272005g00012 376 SUPERFAMILY Protein kinase-like (PK-like) 33 342 IPR011009 -
Stsc272005g00012 376 FunFam Shaggy-related protein kinase kappa 114 361 - -
Stsc272005g00012 376 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272005g00012 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272005g00012 Stsc-Chr272005 59290 62801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272005g00012 38 356 MAP Kinase Gene Family AT3G59790 35.329 7.20e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc272005g00012 Pkinase 3.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272005g00012 K14502 - qsu:111995841 735.717