Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272005g00011 ATGGCCTCCGTGCCGTTGGGGCCGCACCACCACCAACAACCGCCGGACCAGCTGCATCTGCAACCTGACAACAACGCGCCGAAGATTCCGGCTCGCCGCGGTTCCGACGTCGATTCCGATAAGGAAATGTCAGCCACAGTAATTGAAGGGAATGGTGCAGTTACTGGCCACATAATCTCAACCACAATTGGTGGCAAAAATGGTGAACCTAAACAGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAGTCGTTTTCCAGGCAAAATGCTTGGAGACTGGGGAGGCGGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGGTACAAAAATCGTGAGCTTCAATTGATGCGCTTGATGGATCATCCTAACGTAATTTCTCTGAAGCACTGTTTCTTCTCTACAACAAGCAAAGATGAACTTTTCCTGAACTTGGTAATGGAATATGTCCCTGAGACGATGTACCAGGTTCTAAAGCACTACAGTAGTATGAACCAGAGAATGCCCTTAATTTATGTGAAATTATATACATATCAAATCTTTAGGGGACTAGCATATATCCATACTGTTCCTCAAGTTTGCCATAGGGATGTGAAGCCCCAAAATCTTTTGGTTGATCCTCTCACTCATCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAATCCAATATTTCTTACATATGTTCGCGTTACTATCGGGCCCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTTCTTGCCGAACTCCTTCTAGGCCAGCCATTATTTCCCGGAGAAAATCAAGTAGACCAACTTGTGGAAATTATCAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACTCTAATTATACAGATTTTAGATTCCCCCAGATTAAAGCTCATCCTTGGCATAAGATTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATACTCACCAAGTCTTCGTTGTTCCGCCCTGGAAGCATGTGCGCATCCATTCTTTGATGAGCTTCGTGAGCCAAATGCTCGACTACCTAATGGCCGTCCACTGCCTCCACTTTTCAACTTCAAACAGGAAATAGCTGGAGCCTCCCCTGAATTGATCAACCGACTCATCCCGGAGCATGTAAGGAGGCAAAGTGGCCTTGGCTTCCCCCATCCAAGTAGCACACAAATCTAA 1257 0.4551 MASVPLGPHHHQQPPDQLHLQPDNNAPKIPARRGSDVDSDKEMSATVIEGNGAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETMYQVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPQVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNSNYTDFRFPQIKAHPWHKIFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQEIAGASPELINRLIPEHVRRQSGLGFPHPSSTQI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272005g00011 418 FunFam Shaggy-related protein kinase kappa 156 403 - -
Stsc272005g00011 418 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272005g00011 418 FunFam Glycogen synthase kinase-3 beta 60 155 - -
Stsc272005g00011 418 CDD STKc_GSK3 71 363 IPR039192 -
Stsc272005g00011 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Stsc272005g00011 418 SUPERFAMILY Protein kinase-like (PK-like) 75 384 IPR011009 -
Stsc272005g00011 418 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272005g00011 418 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Stsc272005g00011 418 MobiDBLite consensus disorder prediction 1 42 - -
Stsc272005g00011 418 Gene3D Transferase(Phosphotransferase) domain 1 156 403 - -
Stsc272005g00011 418 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 41 405 - -
Stsc272005g00011 418 Gene3D Phosphorylase Kinase; domain 1 61 155 - -
Stsc272005g00011 418 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272005g00011 Stsc-Chr272005 58274 62954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272005g00011 80 398 MAP Kinase Gene Family AT3G59790 35.329 4.37e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc272005g00011 Pkinase 4.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272005g00011 K14502 - rvl:131330059 765.377