Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272005g00009 ATGGAAGGTAACAATGATGATGACGAGTACAGAAGGAAGGCGAAGATCGCAGTGGTGGCGATGGTGGTTCTGGCTTCCATAGCAGTTTTCGCTCTCTTTGTTGCATTTGCTTACTACTGCTACATTCGCCGCAAGGTCTCCATGCGCCGCAACGCCCAAAAAGCTGAAGATGCTAACCTTTGTGAGAAAAGTGACTTTGCAAATTTGCAAGTTGTTGCTGAGAAGGGAGTTAAGGTTTTCACATTCAAGCAGCTACATTCTGCAACAGGTGGCTTTAGCAAGTCCAATGTGATTGGCCATGGTAGTTTTGGCCTTGTTTACCGGGGAGTGCTTAGCGATGGCAGGAAAGTTGCCATTAAATTCATGGATCAGGCTGGAAAGCAAGGGGAAGAAGAATTTAAAGTAGAGGTGGAGTTGCTTAGCCGGTTGCATTCCCCGTATTTGCTAGCATTGCTTGGGTACTGCTCTGATAATAATCATAAACTGCTGGTATACGAGTTCATGGCGAATGGTGGTCTGCAGGAACATCTTTATCCTGTCAGCAATTCTATTGTTATGCCTGTGCAATTGGATTGGGAAACTCGATTAAGCATAGCACTAGAAGCTGCTAAGGGTTTGGAATATCTTCATGAACATGTCAGTCCCCCAGTCATTCACAGAGATTTCAAGAGCAGCAATATCCTCTTGGATAAAAAATTCCATGCAAAAGTTTCTGATTTCGGATTGGCCAAGCTTGGACCTGATAGAGCCGGTGGACATGTTTCGACTCGTGTTTTAGGCACCCAAGGATATGTTGCTCCTGAATATGCACTAACAGGGCATTTAACAACAAAATCAGATGTGTACAGCTATGGTGTTGTGCTTTTGGAGCTGCTTACTGGCCGTGTGCCTGTCGATATGAAGAGACCTCCAGGAGAAGGTGTTCTTGTTTCTTGGGCATTACCCCTTTTAACAGATAGAGAAAAGGTTGTGAAGATTATGGATCCTGCTTTGGAAGGACAGTACTCAATGAAAGAAGTCATCCAGGTAGCAGCAATTGCTGCAATGTGTGTGCAACCGGAAGCGGATTACCGGCCACTGATGGGGGATGTGGTCCAGTCGTTGCTTCCCCTGGTTAAGACTCAGAGGTCCACCTCAAGGGTAGGCACTTGCTCTAGTTTCCATTCTCCTAAGCTGTCCCCTGGCTCAATATCCAGTTAA 1200 0.4583 MEGNNDDDEYRRKAKIAVVAMVVLASIAVFALFVAFAYYCYIRRKVSMRRNAQKAEDANLCEKSDFANLQVVAEKGVKVFTFKQLHSATGGFSKSNVIGHGSFGLVYRGVLSDGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPVSNSIVMPVQLDWETRLSIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPALEGQYSMKEVIQVAAIAAMCVQPEADYRPLMGDVVQSLLPLVKTQRSTSRVGTCSSFHSPKLSPGSISS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272005g00009 399 Gene3D Transferase(Phosphotransferase) domain 1 168 386 - -
Stsc272005g00009 399 ProSiteProfiles Protein kinase domain profile. 92 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272005g00009 399 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Stsc272005g00009 399 CDD STKc_IRAK 98 371 - -
Stsc272005g00009 399 FunFam Serine/threonine-protein kinase PBS1 58 167 - -
Stsc272005g00009 399 SUPERFAMILY Protein kinase-like (PK-like) 74 368 IPR011009 -
Stsc272005g00009 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Stsc272005g00009 399 FunFam Receptor-like serine/threonine-protein kinase ALE2 168 384 - -
Stsc272005g00009 399 Pfam Protein kinase domain 93 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272005g00009 399 PANTHER OS07G0668900 PROTEIN 63 377 - -
Stsc272005g00009 399 Gene3D Phosphorylase Kinase; domain 1 51 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272005g00009 Stsc-Chr272005 46322 48987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272005g00009 7 396 Receptor kinase-like Gene Family AT3G58690 76.410 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc272005g00009 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272005g00009 - - gmx:100804893 690.649