Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272005g00008 ATGTCGGGAGTAGGACCTATCTCGCAGGACTGGGAGCCGGTTGTCATTCGCAAGAAGGCTCCCAACGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCGCCGGCGCCGATATCGAAACCGTCAAGAAATATAATGCTGGGACAAACAAAGCTGCATCTAGTGGCACTTCATTGAACACCAAGAGGCTTGATGATGATACAGAGAATCTAGCTCATGAACGCGTGCCAACTGAACTCAAGAAGGCTATCATGCAAGCAAGGATGGACAAGAAACTCACTCAGGCACAGCTTGCTCAGATTATCAATGAGAAGCCTCAAGTGATACAGGAGTACGAGTTGGGAAAAGCGATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGGGCCCTTGGTGCCAAACTGCGAGGCAAGAAATAG 429 0.5152 MSGVGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGADIETVKKYNAGTNKAASSGTSLNTKRLDDDTENLAHERVPTELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYELGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272005g00008 142 Gene3D - 71 142 IPR010982 GO:0003677
Stsc272005g00008 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Stsc272005g00008 142 MobiDBLite consensus disorder prediction 53 73 - -
Stsc272005g00008 142 CDD HTH_XRE 85 135 IPR001387 -
Stsc272005g00008 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Stsc272005g00008 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Stsc272005g00008 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Stsc272005g00008 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Stsc272005g00008 142 SMART mbf_short4 86 141 IPR001387 -
Stsc272005g00008 142 FunFam Multiprotein bridging factor 1 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272005g00008 Stsc-Chr272005 42978 45198 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Stsc272005g00008 MBF1 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272005g00008 K03627 - gmx:100500420 262.692