Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272004g00004 ATGTATTCTTTCTTATCTTTACTCTTCTCCTTCGCCACCATCGCCGGGGGTTTCATCCTCTTCCGGAGGTGGCGCTACCGACGTCTCAACCTCCCTCCGGGGAGCGTCGGCCTCCCCTTCGTCGGCGAGACTCTCCAGCTGATCTCTTTATACAAGACTGACAACCCAGAGCCGTTCATGGACGAGAGAATTAAACGGTACGGTCCGATCTTCATGACTCACGTTTTCGGCGAAGCGACGGTGTTTTCGGCTGACCCGGATACGAACCGGTTCATTCTGGCGAACGAAGGGAAGCTGTTCGAGATCAGTTACCCCGGTTCGATATCGAACCTTTTGGGGAAGCACTCGTTGTTGCTGATGAAGGGGAATCTACACAAGAGGATGCACTCAATGACAATGAGTTTTGCGAGTTCTACGATATTAAAAGATCATCTTTTGGCTGATGCGGACCGCCTCATACAGCTCAGCATGGATTCTTGGTCCGACCGGGTTCTTCTCATGGAACAAGCGAAGAAGATAACATTTGATTTGACAATGAAACAACTAATGAGCTTTGATCCAGACGAATGGACTGAGTCTCTAAGGAAACACTACGTTCTTGTGATTGAAGGATTCTTCGCTATTCCCTTCACTCTCTTCTCCACTACCTACCGTAGGGCCATCAAGGCAAGAACAAAAGTGGTGGAGGCACTAACGCCAGTAGTGTGGGAGAGAAGAAAACGAAGTGAACAAGATGGGGAGAGAAAGAAGGACATGCTTGGGGCAATGCTGGCCTCCGGCGACCAATTTTCCGATGACGAAATTGTCGATTTTCTGTTGGCCTTGATTGTCGGTGGCTATGAAACCACCTCCACCATCATGACTCTTGCGATCAAGTTCCTCACTGATACTCCTCTTGCCTTGGCTCAGCTTAAGGAAGAGCATGACCAAATCAGATCAAGGAGTAAACCCGGTGCCCCACTTGAATGGACAGATTACAAGTCAATGGTCTTTACTCAATGCGTTGTGAATGAGACCTTAAGGATGGCCAACATAATTGGTGGGATATTCAGGAGAACAACCACTGACATAAAAATAAATGGTTACACCATTCCAAAGGGATGGAAGGTATTTGCATCACTTCGTGCTGTACATCTCAACCCAGACCATTTCAAAGATGCACGCACCTTTAACCCATGGAGATGGCAGAACTCAGAGACAACGACCCCTGGAAATGTATACGCACCGTTTGGAGGAGGTCCTAGGCTGTGCCCTGGCTATGAGCTTGCTAGGGTTGTTCTTTCTGTCTTCCTTCACCGCATTGTCACCACCTTCAGCTGGGTACCTGCTGAGGAAGATAAGTTGGTGTTCTTCCCAACAACAAGGACGCAGAAGAGGCTTCCAATCATAGTTAAGCGTAGGGAGGAGTCAAGTCATTGTATATAG 1425 0.4828 MYSFLSLLFSFATIAGGFILFRRWRYRRLNLPPGSVGLPFVGETLQLISLYKTDNPEPFMDERIKRYGPIFMTHVFGEATVFSADPDTNRFILANEGKLFEISYPGSISNLLGKHSLLLMKGNLHKRMHSMTMSFASSTILKDHLLADADRLIQLSMDSWSDRVLLMEQAKKITFDLTMKQLMSFDPDEWTESLRKHYVLVIEGFFAIPFTLFSTTYRRAIKARTKVVEALTPVVWERRKRSEQDGERKKDMLGAMLASGDQFSDDEIVDFLLALIVGGYETTSTIMTLAIKFLTDTPLALAQLKEEHDQIRSRSKPGAPLEWTDYKSMVFTQCVVNETLRMANIIGGIFRRTTTDIKINGYTIPKGWKVFASLRAVHLNPDHFKDARTFNPWRWQNSETTTPGNVYAPFGGGPRLCPGYELARVVLSVFLHRIVTTFSWVPAEEDKLVFFPTTRTQKRLPIIVKRREESSHCI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272004g00004 474 SUPERFAMILY Cytochrome P450 23 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS P450 superfamily signature 334 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS P450 superfamily signature 417 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS P450 superfamily signature 408 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PANTHER CYTOCHROME P450 26 28 441 - -
Stsc272004g00004 474 PRINTS E-class P450 group I signature 267 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS E-class P450 group I signature 373 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS E-class P450 group I signature 417 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS E-class P450 group I signature 287 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS E-class P450 group I signature 407 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 PRINTS E-class P450 group I signature 333 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 410 419 IPR017972 GO:0005506|GO:0016705
Stsc272004g00004 474 Gene3D Cytochrome P450 22 467 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 CDD CYP90-like 63 466 - -
Stsc272004g00004 474 Pfam Cytochrome P450 32 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272004g00004 474 FunFam Cytochrome P450 90A1 21 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272004g00004 Stsc-Chr272004 20778 27951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272004g00004 120 468 Cytochrome P450 AT5G05690 75.429 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272004g00004 K09588 - gmx:100781291 753.051