Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272003g00010 ATGAAGGAGTTGCTAGCCATCATAGGAACAATAACACACAGCGAAGCATCTTTGGCAGGTGAAATTAATAACGCTACAAAGAACATTCCTATACTACTGTCTCTATCTTCTCCTGCAGCAGCAGCAGCAGCAGCTAGAACACAGTTACCTTCTTCTCTATCTTCTCGATTGCCACCACTAATCCAACTTGGTGATGATATCAAGGTTCACATGCAATGCCTTGTAGCCATTGTAAGACGCTTCAAATGGCAAAAAGTGACAACAGTCTATGAACTTAATAATGGATTTTCTTATGATCCAAGTGTATTAATTGATCTCTCTCATTCTCTTCGGCATGTTGGATCTGAGATTGATAACCATTTAGCATTGCCTTCCTTGTCCTCCTTGTCTTCTCAATCCGAACTAAAATCTAGAATCGAAAATGAGCTTAGCCAACTAAAGAATAAGAAGAACAACAGGGTCTTCTTGATTGTTCACTCTTCTTTAGAGTTAGCAATCATGCTTTTCGAGAAAGCAAAACAAATGGGTATGATGGAGAAAGGATATGTATGGGTCATCCCAAATGAAGTTGCTGCCCTTCTTGATTCAGTTAATTCATCGGTTATCTCTAGCATGCAAGGTGTTATTGGGTTCAAAAAGCATCTCATGGAAACGAGCGAATCATATAGAAAGTTCAAGTTCAAATTCCCAAGAAGGTTTGCATTAGAGTATCCTCAAGAAGAGTACACTCCAAGTGTTTTTGCACTTCAAGCTTATGAAGCAGCTTTTGCTGTTGCTAAGGTTTCAAATAAGTCACAAGGAATGTGCAACATGAAAGAATTCCTTGTTAAAGAAGAATTGCATCAATCTTTAACCTTCAGCATAATTAAGGTGATAGGAAAAAGTTACAGAGAAATGGCATTTTGGTCTCCAATAAGTGGTTTCTCTAAAAACTCTGTAAGACGTAAGGCTCATGAGGAAATATCACTTAAAATAGGAGTACCTGCAAATAGTGCCTTTGCTCAGTTCGTGAATGTCACCTATGGTCAAAGTAAGAATGAACCTTCCATAACTGGTTTTTCAATAGATGTATTCAGAGCAGCAACTAAAAATCTTTCGTATCACTTGCCCTATAAGTTTGTTCCCTTCCATGGCACCTACGATGATATGGTTAATGCAGTTAACAATAAGACATTAGATGCTGCTGTTGGAGATATATCAATATTGGCATATAGATATCAGTTAGTTGAATTCTCACAACCATATGTTGAGTCCGGGCTTTGCATGGTAGTGATTGAGAAGCCGAAAAAATCAAAAATAACATGGATGTTTTGGAATGCATTCACAAAAGATATGTGGTTGATGATGGCAGCAATGCACATTTTTGTTGGATTTGTCATTTGGCTAATTGAACGCGAAGTCAATGAAGAACTACAAGGGCTGGGGGAAATGCTTTGGTTTTTAGTCACAGTAATATTCTTTGCACATAGAGAACCAATAAGAAGACCATTGGCTCGAACTGTTTTGGCACCATGGTTATTTGTTATCCTAATTTTAAGTAGTAGCTTCACAGCAAGTCTTACTTCCGTGATGACTGTATCGAAACTTGAACCGTCAGTTTTGGATATTCAAACACTTCAGAAGAGAAATGCCTCAGTTGGTTGTGATAGGAATTCATTTATTGTCAAGTATTTAACTGAGGTACTCAAATTCAAAGATGAGAACATTAGAAGAATGAATTCCAGTGATGATTACCCTGCAGCCTTTAAGAATAATGTGATTGAAGCAGCTTTCTTTGCCGTCCCTCATGCTAAAGTCTTTATCGCAAAGTACTCATGTGAAGGCTTCGTCATAGCACCAGGAAGCACCTTCATGCTCGGTGGCTTTGGTTTTGTATTTCAAAAGGGCTCCACTTTGGCTAGGAATATATCTGAGCCTTTACTAAAGATTATAGAGGATGGAGAAACAGAGAAACTTGAAAAACATATGTTGTCCAAGTTAACTTGCTTTCGTTCAGAAGAAAAAGCAAAAGATGGGCCACCGTTAGGTTATCAACCTTTCCTTGGGCTATTTTGCATTTGTGGCACCATTGCTACTTTGGCACTATTGTATATCATGATTTGTTCAACTTTAAAGAATGTTGAGAACTTGGTAAGAAACATAAGAGGTGCATCAGCTAAGTTAAGGAGAATAAGGAGATGGACAACAACACATTTTGCTGGGATCTATTCTAAAATACAATCATGGAGCATGAGAAGGGCTAATGTTGCTTTAGAAACAAGAAGTTCAGTGGAAATGGTCATTGATAGTGAGCAAATCCCTCAGGTAGTTGAAGTTGTTTGA 2322 0.3803 MKELLAIIGTITHSEASLAGEINNATKNIPILLSLSSPAAAAAAARTQLPSSLSSRLPPLIQLGDDIKVHMQCLVAIVRRFKWQKVTTVYELNNGFSYDPSVLIDLSHSLRHVGSEIDNHLALPSLSSLSSQSELKSRIENELSQLKNKKNNRVFLIVHSSLELAIMLFEKAKQMGMMEKGYVWVIPNEVAALLDSVNSSVISSMQGVIGFKKHLMETSESYRKFKFKFPRRFALEYPQEEYTPSVFALQAYEAAFAVAKVSNKSQGMCNMKEFLVKEELHQSLTFSIIKVIGKSYREMAFWSPISGFSKNSVRRKAHEEISLKIGVPANSAFAQFVNVTYGQSKNEPSITGFSIDVFRAATKNLSYHLPYKFVPFHGTYDDMVNAVNNKTLDAAVGDISILAYRYQLVEFSQPYVESGLCMVVIEKPKKSKITWMFWNAFTKDMWLMMAAMHIFVGFVIWLIEREVNEELQGLGEMLWFLVTVIFFAHREPIRRPLARTVLAPWLFVILILSSSFTASLTSVMTVSKLEPSVLDIQTLQKRNASVGCDRNSFIVKYLTEVLKFKDENIRRMNSSDDYPAAFKNNVIEAAFFAVPHAKVFIAKYSCEGFVIAPGSTFMLGGFGFVFQKGSTLARNISEPLLKIIEDGETEKLEKHMLSKLTCFRSEEKAKDGPPLGYQPFLGLFCICGTIATLALLYIMICSTLKNVENLVRNIRGASAKLRRIRRWTTTHFAGIYSKIQSWSMRRANVALETRSSVEMVIDSEQIPQVVEVV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272003g00010 773 Gene3D - 434 575 - -
Stsc272003g00010 773 FunFam Glutamate receptor 70 243 - -
Stsc272003g00010 773 SUPERFAMILY Periplasmic binding protein-like II 314 654 - -
Stsc272003g00010 773 Gene3D - 67 241 - -
Stsc272003g00010 773 Pfam Receptor family ligand binding region 4 266 IPR001828 -
Stsc272003g00010 773 Pfam Bacterial extracellular solute-binding proteins, family 3 347 654 IPR001638 -
Stsc272003g00010 773 Coils Coil 129 152 - -
Stsc272003g00010 773 SMART GluR_14 322 659 IPR001320 GO:0015276|GO:0016020
Stsc272003g00010 773 CDD GluR_Plant 323 657 - -
Stsc272003g00010 773 FunFam Glutamate receptor 434 567 - -
Stsc272003g00010 773 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 706 IPR015683 -
Stsc272003g00010 773 SUPERFAMILY Periplasmic binding protein-like I 52 307 IPR028082 -
Stsc272003g00010 773 FunFam Glutamate receptor 318 433 - -
Stsc272003g00010 773 Pfam Ligand-gated ion channel 655 688 IPR001320 GO:0015276|GO:0016020
Stsc272003g00010 773 Gene3D - 310 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272003g00010 Stsc-Chr272003 59280 62866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272003g00010 2 699 Ion Channels AT5G11210 29.771 1.65e-89 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272003g00010 - - aip:107605043 1068.91