Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272002g00015 ATGCTCTTAAGATGGGTTAGAGAGGATACCTTGAAGGCCTTGCAGGAAAAGGCAAAAGAACCAGCATTGCCTGAACCGGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTATGAAGGATGTGGAAAGACGTTCATAGATGCTGGTGCATTGAGGAAACATTCTCACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAGGGGTGTGGAAAGAAATTTCTTGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCACACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCGCTGGATTTCAACCTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGTCCATACCCAGATTGCGGAAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCCTCTCACCATGAAAAGAACGCAGCAGTGGAGATGCCGAAGTATACTCCACCTTTGGAAAGACAACCAAAAGCTACTAAACATTCCGGTGCGGCATATGGTTCTGCATCATCAGATCGCCCCTATGCATGCCCTTATGAAGGTTGTGAAAAAGCCTATATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAACATCCTGGGCATATGTTTGATGAAAATGCAGAGCATGCTCAAGCTAATGTTGACAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGGGGGAAACGATCAAATGGTAAAATTCAGAAGCATAGTAAGCCAAAACCAAACCTTAAGTTGCCTCCTCCTCCCAAAATTGCCAAACGGAAAGCACCACCGCCTGCTCCTGCCACTATAGCCGTAACGAAAAAACCTTGGCCTCTGAATGTGAAAGATGAGGCTTACGACGAAGAAGACAGTGAAGAAACCGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGGTGGCAACAATGACGATGATGACGACGAAGAAACAGAATATGAAGACTGA 1008 0.4355 MLLRWVREDTLKALQEKAKEPALPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEMPKYTPPLERQPKATKHSGAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMFDENAEHAQANVDNEMDEASDQDAYGGKRSNGKIQKHSKPKPNLKLPPPPKIAKRKAPPPAPATIAVTKKPWPLNVKDEAYDEEDSEETEEDRDNVEDGWRYGGNNDDDDDEETEYED 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272002g00015 335 FunFam Putative zinc finger protein 143 62 92 - -
Stsc272002g00015 335 MobiDBLite consensus disorder prediction 233 335 - -
Stsc272002g00015 335 ProSitePatterns Zinc finger C2H2 type domain signature. 190 213 IPR013087 -
Stsc272002g00015 335 MobiDBLite consensus disorder prediction 259 274 - -
Stsc272002g00015 335 FunFam Zinc finger protein 410 93 120 - -
Stsc272002g00015 335 Gene3D Classic Zinc Finger 165 230 - -
Stsc272002g00015 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 218 IPR013087 -
Stsc272002g00015 335 SUPERFAMILY beta-beta-alpha zinc fingers 183 211 IPR036236 -
Stsc272002g00015 335 MobiDBLite consensus disorder prediction 321 335 - -
Stsc272002g00015 335 FunFam zinc finger transcription factor YY1 122 153 - -
Stsc272002g00015 335 MobiDBLite consensus disorder prediction 297 311 - -
Stsc272002g00015 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 65 IPR013087 -
Stsc272002g00015 335 FunFam zinc finger transcription factor YY1 36 61 - -
Stsc272002g00015 335 SMART c2h2final6 36 60 IPR013087 -
Stsc272002g00015 335 SMART c2h2final6 65 89 IPR013087 -
Stsc272002g00015 335 SMART c2h2final6 188 213 IPR013087 -
Stsc272002g00015 335 SMART c2h2final6 125 149 IPR013087 -
Stsc272002g00015 335 SMART c2h2final6 95 119 IPR013087 -
Stsc272002g00015 335 Gene3D Classic Zinc Finger 122 154 - -
Stsc272002g00015 335 Gene3D Classic Zinc Finger 62 92 - -
Stsc272002g00015 335 MobiDBLite consensus disorder prediction 163 185 - -
Stsc272002g00015 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 94 IPR013087 -
Stsc272002g00015 335 Pfam Zinc finger, C2H2 type 95 119 IPR013087 -
Stsc272002g00015 335 Pfam Zinc finger, C2H2 type 125 149 IPR013087 -
Stsc272002g00015 335 Gene3D Classic Zinc Finger 36 61 - -
Stsc272002g00015 335 Gene3D Classic Zinc Finger 93 120 - -
Stsc272002g00015 335 ProSitePatterns Zinc finger C2H2 type domain signature. 67 89 IPR013087 -
Stsc272002g00015 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 154 IPR013087 -
Stsc272002g00015 335 ProSitePatterns Zinc finger C2H2 type domain signature. 38 60 IPR013087 -
Stsc272002g00015 335 SUPERFAMILY beta-beta-alpha zinc fingers 39 89 IPR036236 -
Stsc272002g00015 335 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 3 309 - -
Stsc272002g00015 335 ProSitePatterns Zinc finger C2H2 type domain signature. 97 119 IPR013087 -
Stsc272002g00015 335 ProSitePatterns Zinc finger C2H2 type domain signature. 127 150 IPR013087 -
Stsc272002g00015 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 124 IPR013087 -
Stsc272002g00015 335 FunFam Zinc finger transcription factor YY1 163 230 - -
Stsc272002g00015 335 SUPERFAMILY beta-beta-alpha zinc fingers 76 128 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272002g00015 Stsc-Chr272002 81242 82961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272002g00015 8 320 C2H2 Transcription Factor Family AT4G06634 66.159 1.87e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272002g00015 zf-C2H2 0.0077 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272002g00015 - - qsa:O6P43_031492 518.85