Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272002g00014 ATGCGAACATGGAACCCCAAAGCTGACGCGCTCTCTCTCTCTCTCCGTTCTTCTCTTCCCGAAATTCCGATCCTTTTTTTTCCCCCTTTCACTGCTTCCCTCAAACCAAACCCTAATAAAGTGTCAGATAGCGTAGCATCGGAATTTTTGGCGTTCAAATTCTTGGTCCAGAAATCGATGGAGATTCACTACAGTAGCAGTTACTTCGAAAGGCGCCCCATAATCAGGTCCAAGGCCCCAGCTGCTAAATGGGTTAAAGAATGGGTTCCCCAAGATGTTGTAGCCACTGGGGGGAAATGCATGCTCTTAAGATGGGTTAGAGAGGATACCTTGAAGGCCTTGCAGGAAAAGGCAAAAGAACCAGCATTGCCTGAACCGGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTATGAAGGATGTGGAAAGACGTTCATAGATGCTGGTGCATTGAGGAAACATTCTCACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAGGGGTGTGGAAAGAAATTTCTTGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCACACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCGCTGGATTTCAACCTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGTCCATACCCAGATTGCGGAAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCCTCTCACCATGAAAAGAACGCAGCAGTGGAGATGCCGAAGTATACTCCACCTTTGGAAAGACAACCAAAAGCTACTAAACATTCCGGTGCGGCATATGGTTCTGCATCATCAGATCGCCCCTATGCATGCCCTTATGAAGGTTGTGAAAAAGCCTATATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAACATCCTGGGCATATGTTTGATGAAAATGCAGAGCATGCTCAAGCTAATGTTGACAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGGGGGAAACGATCAAATGGTAAAATTCAGAAGCATAGTAAGCCAAAACCAAACCTTAAGTTGCCTCCTCCTCCCAAAATTGCCAAACGGAAAGCACCACCGCCTGCTCCTGCCACTATAGCCGTAACGAAAAAACCTTGGCCTCTGAATGTGAAAGATGAGGCTTACGACGAAGAAGACAGTGAAGAAACCGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGGTGGCAACAATGACGATGATGACGACGAAGAAACAGAATATGAAGACTGA 1308 0.4457 MRTWNPKADALSLSLRSSLPEIPILFFPPFTASLKPNPNKVSDSVASEFLAFKFLVQKSMEIHYSSSYFERRPIIRSKAPAAKWVKEWVPQDVVATGGKCMLLRWVREDTLKALQEKAKEPALPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAAVEMPKYTPPLERQPKATKHSGAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMFDENAEHAQANVDNEMDEASDQDAYGGKRSNGKIQKHSKPKPNLKLPPPPKIAKRKAPPPAPATIAVTKKPWPLNVKDEAYDEEDSEETEEDRDNVEDGWRYGGNNDDDDDEETEYED 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272002g00014 435 Gene3D Classic Zinc Finger 265 330 - -
Stsc272002g00014 435 SMART c2h2final6 165 189 IPR013087 -
Stsc272002g00014 435 SMART c2h2final6 288 313 IPR013087 -
Stsc272002g00014 435 SMART c2h2final6 225 249 IPR013087 -
Stsc272002g00014 435 SMART c2h2final6 195 219 IPR013087 -
Stsc272002g00014 435 SMART c2h2final6 136 160 IPR013087 -
Stsc272002g00014 435 MobiDBLite consensus disorder prediction 263 285 - -
Stsc272002g00014 435 FunFam Zinc finger transcription factor YY1 263 330 - -
Stsc272002g00014 435 ProSitePatterns Zinc finger C2H2 type domain signature. 167 189 IPR013087 -
Stsc272002g00014 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 224 IPR013087 -
Stsc272002g00014 435 SUPERFAMILY beta-beta-alpha zinc fingers 176 228 IPR036236 -
Stsc272002g00014 435 FunFam Putative zinc finger protein 143 162 192 - -
Stsc272002g00014 435 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Stsc272002g00014 435 SUPERFAMILY beta-beta-alpha zinc fingers 139 189 IPR036236 -
Stsc272002g00014 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 194 IPR013087 -
Stsc272002g00014 435 Pfam Zinc finger, C2H2 type 195 219 IPR013087 -
Stsc272002g00014 435 Pfam Zinc finger, C2H2 type 225 249 IPR013087 -
Stsc272002g00014 435 FunFam Zinc finger protein 410 193 220 - -
Stsc272002g00014 435 ProSitePatterns Zinc finger C2H2 type domain signature. 197 219 IPR013087 -
Stsc272002g00014 435 FunFam zinc finger transcription factor YY1 136 161 - -
Stsc272002g00014 435 ProSitePatterns Zinc finger C2H2 type domain signature. 227 250 IPR013087 -
Stsc272002g00014 435 Gene3D Classic Zinc Finger 136 161 - -
Stsc272002g00014 435 Gene3D Classic Zinc Finger 193 220 - -
Stsc272002g00014 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 254 IPR013087 -
Stsc272002g00014 435 FunFam zinc finger transcription factor YY1 222 253 - -
Stsc272002g00014 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Stsc272002g00014 435 SUPERFAMILY beta-beta-alpha zinc fingers 283 311 IPR036236 -
Stsc272002g00014 435 ProSitePatterns Zinc finger C2H2 type domain signature. 290 313 IPR013087 -
Stsc272002g00014 435 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 71 409 - -
Stsc272002g00014 435 MobiDBLite consensus disorder prediction 421 435 - -
Stsc272002g00014 435 MobiDBLite consensus disorder prediction 397 411 - -
Stsc272002g00014 435 MobiDBLite consensus disorder prediction 359 374 - -
Stsc272002g00014 435 MobiDBLite consensus disorder prediction 333 435 - -
Stsc272002g00014 435 Gene3D Classic Zinc Finger 222 254 - -
Stsc272002g00014 435 Gene3D Classic Zinc Finger 162 192 - -
Stsc272002g00014 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 318 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272002g00014 Stsc-Chr272002 81242 84020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272002g00014 69 420 C2H2 Transcription Factor Family AT4G06634 65.395 2.23e-146 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272002g00014 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272002g00014 - - zju:107412546 578.17