Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272002g00012 ATGGCAAATTCAAAAGGCTCATCGAATTTTAGGAATTTTATGTATCCTGGAAAGCATGCCCTGCTTCCCCCGAAAAGCCCATTTCCTAGTGTTTCCCAACCATATGCTGATTATGTCCCAAATCCTGTGGTTGGTTCAAAAACTGTTCAGAAACCTAGAGAAGGAAACGTACACCACCTTCGTACTTCATCTGAGAGTTTTGTCATAGAGGAGCAACCTTCCTGGCTCGATGATCTCCTTAATGAGCCAGAGACACCAGTTCGAAGAGGCGGCCATCGGCGCTCGTCAAGTGATTCTTTTGCATACGTAGACACACTCAATATGTCTAACATCAATCATGGAGATCAGGATGAATATAAATATAAGAACTTGTTATCTTTTCCATCTTGGTCATCCCAAGACTTTGATCTTAACAAAAATGTTCGTCATATACCCATGCATGCTGCAAAGAATTCGGCAAAACAGAAAATTAGATCATGGGACTCATTTTCAAATATTGTAAATCAACCAGCTGGTGTTCTCTCTGGCAAAGACAATGGTGCTTTTTTGGGCACAGGGTCACCATGCCCACCACCACATGAAGCAGAGGGGCTCCCGTCAACTGCAAATGAAAACCATGATGCAGCAGAACCTGGAATACAGGATGCAAAATCATCTTCCGAGAAAAAAGATACTTCACATGTGAAGCCATCTGCTTCTGAAACAGATACAAAACGTGCCAAACAGCAATTTGCTCAGCGTTCAAGGGTCCGAAAACTTCAATATATAGCTGAGCTGGAAAGAAATGTTCAATCTCTACAGGCAGAAGGGTCTGAAATATCAGCTGAGCTGGAGTTTCTCAACCAGCAGAATCTTATACTGAGCATGGAGAATAAAGCACTCAAGCATCGTTTAGAAAGTACAGCACAGGAGCAGCTTATCAAATACTTGGAGCAGGAAGTGCTGGAAAGAGAGATTGGAAGATTACGCGCATTGTATCAGCAGCAGCAACAGCTCTCGCACCATCCACAACAACAACCATCTGCTAGTCACAGACGCACCAATAGCAGAGACCTTGAATCTCAGTTTGCAAACCTTTCTCTAAAACACAAGGACAGCGGCTCAGGGCATGACCCCGCAACTGGTGCACTTAGAATTTAA 1140 0.4351 MANSKGSSNFRNFMYPGKHALLPPKSPFPSVSQPYADYVPNPVVGSKTVQKPREGNVHHLRTSSESFVIEEQPSWLDDLLNEPETPVRRGGHRRSSSDSFAYVDTLNMSNINHGDQDEYKYKNLLSFPSWSSQDFDLNKNVRHIPMHAAKNSAKQKIRSWDSFSNIVNQPAGVLSGKDNGAFLGTGSPCPPPHEAEGLPSTANENHDAAEPGIQDAKSSSEKKDTSHVKPSASETDTKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGSEISAELEFLNQQNLILSMENKALKHRLESTAQEQLIKYLEQEVLEREIGRLRALYQQQQQLSHHPQQQPSASHRRTNSRDLESQFANLSLKHKDSGSGHDPATGALRI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272002g00012 379 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 9 361 IPR044797 -
Stsc272002g00012 379 MobiDBLite consensus disorder prediction 178 246 - -
Stsc272002g00012 379 Coils Coil 312 332 - -
Stsc272002g00012 379 Coils Coil 249 283 - -
Stsc272002g00012 379 MobiDBLite consensus disorder prediction 328 345 - -
Stsc272002g00012 379 Gene3D - 228 295 - -
Stsc272002g00012 379 SMART brlzneu 234 293 IPR004827 GO:0003700|GO:0006355
Stsc272002g00012 379 MobiDBLite consensus disorder prediction 328 379 - -
Stsc272002g00012 379 CDD bZIP_plant_RF2 236 284 IPR044759 GO:0003700|GO:0006355
Stsc272002g00012 379 MobiDBLite consensus disorder prediction 216 243 - -
Stsc272002g00012 379 SUPERFAMILY Leucine zipper domain 245 287 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272002g00012 Stsc-Chr272002 74524 78046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272002g00012 20 308 bZIP Transcription Factor Family AT2G42380 29.252 1.79e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272002g00012 - - gmx:100813098 580.867