Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272002g00009 ATGGATAATAACAATAATCATGATAAAGAACAAGTTTTCTTACATGGTGACTTGGATATTTATGTGATAGAAGCAAAATCTCTTCCAAACTTGGATCTTTCTTCTGAAGCAGTTAGAAGATGCCTCAGCGTGGGGAGCTTCTTAACAGCACCATTCCAAAGGAAAATCAAGCGTTCAGGGAAAGATAAGATGATAACAAGTGACCCTTATGTCTCTGTAGTTATAGCAGGTGCTACCATAGCTCAAACTAGAGTGATCCCAAACTGCGAAAACCCTCTTTGGGACGAGCATTTCATCATGCCGAAGATTGAGTTCATTGTGAAGGACAATGATGTTCTTGGTGCTGAGTTAATTGGTGTAGTTGAGATTCCTGTTCAGAAGGTAGTCTCAGGAGAAAGCATAGATGATTGGTTTCCGATCATCGGACAGTATTCCAATTGCTTGCAGCCTTATCCAGCCCTGCATCTTTCAATCATGTTTTGGCCGGTCGGCGGCGATAAGGACGATGTTTGTAGTGGCAATACCGGAGTTCCTAAGACATATTTTCCACTAAGGAAAGGAGGGAATGTGACTCTGTATCAAGATGCTCATGTTCCTGATGGAATGCTACCTGGGATTCAATTGGAGGGTGGAAAAGTGTATCAAGCTGGTAAATGTTGGGAGGATATTTGCCATGCAATTTTGGAAGCTCATCATCTGATATATATTGTAGGTTGGTCAGTTTATCATCCAATAAGGCTTGTTAGAGAGCCAACAAGACCATTGCCTCCTGGTGGAGAGCTTACACTTGGAGAGTTGTTGAAGTACAAGTCTCAAGAAGGTCTTAGAGTGGTTATGCTTATTTGGGATGACAGAACTTCACATGACAAGTTTCTTATCAAAACAGTTGTGGGAACCCTCTTTACTCATCATCAGAAATGTGTGCTTGTTGACACACAAGGTTCAGGGAATAATCGGAAAATATCTGCTTTTATTGGTGGTCTAGATCTCTGTGATGGCAGATATGACACACCTCAGCATAGGCTTTTGCGCGATGTAGAAACCATCTTCAAGGAGGATTTTCATAATCCTACATTTCAAGTAGGTTCTAGTGAAGGTGGACCAAGAGAGCCATGGCATGACATGCATTGCAAGGTTGAAGGGCCAGCTGCTTATGATATATTAACCAATTTCGAACAAAGATGGAAGAAAGCGAAAAAATGGCGAGACTTCAGACTCAATAGGGTCACGAATTGGCACGACGATGCATTGCTAAGGTTAGACCGGATATCATGGATAGCCAGTCCATCTTCTAGTTCTGATGATGATAAAGCTGTCCACGTGACCGATGAAAATGATCCTGAAACTTGGAATGTGCAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAGGGTTTTCCAAAGGATTTCGACAAGGCTCAGGCTCAGAATCTTTTATGTGGAAAGAATTTAATAGTAGACCAAAGCATTCATACTGCTTATGTAAAAGCAATAAGATCAGCTCAACACTTTATTTACATTGAGAATCAGTATTTTCTGGGCTCATCATATCATTGGCCTTCATATGAAAAAGCAGGTGCAAATCATTTGATTCCAATGGAGTTGGCCTTGAAGATTTCTAGCAAGATCCGAGCGAATGAACGTTTCGCTGTATATGTAGTTATACCAATGTGGCCAGAGGGGGTTCCAACAAGTAATGCTGTTCAGGAAATCTTGTTCTGGCAGGGACAAACAATGGCTATGATGTACAAGATCATTGCAGATGCACTTAAAGATGCTGGAGTCTCCAATATATATCATCCACATGATTATCTCAATTTTTTCTGCCTTGGAAATAGAGAACCTGAGGCCTCACCAACTCCATCACCACATAAGGAATCATCCGAAAACCGTGGTTTGGGATCAGTCAAAAAATTTAAACGTTTCATGATTTATGTTCATGCCAAAGGAATGATAGTCGATGATCAATACGTAATCATTGGATCAGCAAACATTAACCAGAGATCAATGGATGGTTCAAGGGACACAGAAATAGCCATGGGTGCTTATCAACCAAAATATACTTGGAAAGAAAAAAAATCCCATCCACGTGGCCAGGTGTATGGATACCGGATGTCACTGTGGGCGGAGCACCTCGGCGGTCTGGACGACAGATTCACAGAGCCCCACAGCTTGGATTGTGTGAGGGCTATGAACAACATAGCCAGACAAAACTGGAACACATATTCATCAGATAGAATAAGTCATATGCAAGGGCACTTGATGTTGTACCCAGTTAAGGTTGGCAGGGATGGAAAAGTTAGTGCACTTGATAATCATGATTCATTTCCTGATGTTGGTGGCAAAATTCTTGGAGCAGCAAATTCTCTTCCAGATACCCTAACTACATGA 2391 0.4157 MDNNNNHDKEQVFLHGDLDIYVIEAKSLPNLDLSSEAVRRCLSVGSFLTAPFQRKIKRSGKDKMITSDPYVSVVIAGATIAQTRVIPNCENPLWDEHFIMPKIEFIVKDNDVLGAELIGVVEIPVQKVVSGESIDDWFPIIGQYSNCLQPYPALHLSIMFWPVGGDKDDVCSGNTGVPKTYFPLRKGGNVTLYQDAHVPDGMLPGIQLEGGKVYQAGKCWEDICHAILEAHHLIYIVGWSVYHPIRLVREPTRPLPPGGELTLGELLKYKSQEGLRVVMLIWDDRTSHDKFLIKTVVGTLFTHHQKCVLVDTQGSGNNRKISAFIGGLDLCDGRYDTPQHRLLRDVETIFKEDFHNPTFQVGSSEGGPREPWHDMHCKVEGPAAYDILTNFEQRWKKAKKWRDFRLNRVTNWHDDALLRLDRISWIASPSSSSDDDKAVHVTDENDPETWNVQVFRSIDSGSVKGFPKDFDKAQAQNLLCGKNLIVDQSIHTAYVKAIRSAQHFIYIENQYFLGSSYHWPSYEKAGANHLIPMELALKISSKIRANERFAVYVVIPMWPEGVPTSNAVQEILFWQGQTMAMMYKIIADALKDAGVSNIYHPHDYLNFFCLGNREPEASPTPSPHKESSENRGLGSVKKFKRFMIYVHAKGMIVDDQYVIIGSANINQRSMDGSRDTEIAMGAYQPKYTWKEKKSHPRGQVYGYRMSLWAEHLGGLDDRFTEPHSLDCVRAMNNIARQNWNTYSSDRISHMQGHLMLYPVKVGRDGKVSALDNHDSFPDVGGKILGAANSLPDTLTT 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272002g00009 796 Gene3D Endonuclease Chain A 209 417 - -
Stsc272002g00009 796 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 642 669 IPR001736 GO:0003824
Stsc272002g00009 796 Gene3D C2 domain 12 158 IPR035892 -
Stsc272002g00009 796 Pfam C2 domain 16 140 IPR000008 -
Stsc272002g00009 796 Gene3D Endonuclease Chain A 455 695 - -
Stsc272002g00009 796 PIRSF PLD_plant 290 796 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc272002g00009 796 PIRSF PLD_plant 3 296 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc272002g00009 796 CDD C2_plant_PLD 12 160 - -
Stsc272002g00009 796 SUPERFAMILY Phospholipase D/nuclease 487 726 - -
Stsc272002g00009 796 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 163 IPR035892 -
Stsc272002g00009 796 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Stsc272002g00009 796 Pfam Phospholipase D Active site motif 300 334 IPR001736 GO:0003824
Stsc272002g00009 796 Pfam Phospholipase D C terminal 716 786 IPR024632 -
Stsc272002g00009 796 SUPERFAMILY Phospholipase D/nuclease 177 403 - -
Stsc272002g00009 796 Pfam PLD-like domain 636 678 IPR025202 -
Stsc272002g00009 796 SMART pld_4 299 334 IPR001736 GO:0003824
Stsc272002g00009 796 SMART pld_4 642 669 IPR001736 GO:0003824
Stsc272002g00009 796 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 299 334 IPR001736 GO:0003824
Stsc272002g00009 796 PANTHER PHOSPHOLIPASE D 9 785 IPR015679 -
Stsc272002g00009 796 SMART C2_3c 17 137 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272002g00009 Stsc-Chr272002 52031 55550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272002g00009 12 795 Phospholipase D Gene Family (Wang group) AT2G42010 51.276 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272002g00009 K01115 - gmx:100779740 1267.29