Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272002g00005 ATGGACAACCAAAATGCGAAGAAATCGCTTACTTGGTCTCAAAGAAAGAGCATAATCTTGGATGTAGCAAATGGTTTGGTCTATTTGCACTTTGGACTTAAACCTGCAATCTATCACAGAGATATCAAAGCCACCAATATACTGCTTGATGCAGGTATGAATGCAAGAGTTGCGGATTTTGGCCTAGCTAAACAAAACATTGAAAGTAGGTCTCAGTTAAATACAAGAGTTGCTGGAACTCATGGATACCTAGCACCAGAATATGCCCTTTATGGCCAATTATCTGAAAAGAGTGATGTCTATAGCTTTGGTGTGGTTATATTGGAAATATTGTGTGGAAGAAAAGCTCTTGATTTATCTTCATCTGGCACACCTGCGTTCTTTATCTCAGATTGGGTTTGGTCATTGCTGAAATCTGGTAACATAGAATCAGCTTTGGATGCTTCTATGTTGATAGATGAAAACCTTGCCAGTAGGAAAATAATAGAGAGATTCTTAATGGTTGGTGTTCTGTCTTCTCATGTAGTAGCTGATTCAAGGCCAACAATTTTGGATGCCTTGAAGATGTTAGAAGGGGATATTGAAATTCCACCAATTCCAGATAGGCCAATGGCTCTTGGTAACCATGATTTTCCCATGGTTATTCAGAATAGTGAAAACCAAGATGTATAA 672 0.3839 MDNQNAKKSLTWSQRKSIILDVANGLVYLHFGLKPAIYHRDIKATNILLDAGMNARVADFGLAKQNIESRSQLNTRVAGTHGYLAPEYALYGQLSEKSDVYSFGVVILEILCGRKALDLSSSGTPAFFISDWVWSLLKSGNIESALDASMLIDENLASRKIIERFLMVGVLSSHVVADSRPTILDALKMLEGDIEIPPIPDRPMALGNHDFPMVIQNSENQDV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272002g00005 223 SMART serkin_6 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272002g00005 223 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 7 205 - -
Stsc272002g00005 223 Gene3D Transferase(Phosphotransferase) domain 1 2 196 - -
Stsc272002g00005 223 SUPERFAMILY Protein kinase-like (PK-like) 8 191 IPR011009 -
Stsc272002g00005 223 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 2 198 - -
Stsc272002g00005 223 Pfam Protein kinase domain 6 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272002g00005 223 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272002g00005 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272002g00005 Stsc-Chr272002 29312 29983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272002g00005 4 213 Receptor kinase-like Gene Family AT1G11050 68.692 9.97e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc272002g00005 Pkinase 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272002g00005 - - lja:Lj0g3v0288509.1 346.28