Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272002g00004 ATGAAACCTGTCTTTGTGCTTCTCCTAATCTTTGTTGTGGCTCCTACAAAGCCGTTCTCATCATCATCATCTCCCACCATTTCCCATAGCAGCAACAACTCTGCATGCCCAGTGGGAATGGATTATGTGCTAACAGTCCCTTGGAACTCCTCTAGCTGCCATAACTTCCAACCCTTCCCATCCAAAACAAAACACGTTCAACTCCCGAATCTTCCTACCTCAAAATCCTGCCTTCATGACTTCCAATCCAAGCTCAGTTCTCTCTCACTTCCAAACAACCTTGTTTCCTCTTGCTTTGACCCACTTCAGTTTGTTATCAGTGCCAACATATGCCCTAACATCCAATCTAAGCAAGACTGGGTCAACATTCTTGGTCCTACAACTCAGTTCAATAATGGATGTAAGCCTGAACTCAGTGTTTCTGCCAATTGTGATGTTTGTGTCACAGAAGATCTAAATCTTCTGCAAAAGATGAATGCTATTGATGGAAATGCTTCTCATTCCCAAGATTGTTTTTACTTCTCAATTCTATATGCTGCTGGAATTGCAAACGAGCTTAGCCCCGAAAGCAGAGGTGCTTTGTCATGTATTTTTGAGCTGCCACTTAATAATGCTCAAGTGAGGGGTGCCAGAAGAAAGAGCCATAAACATACTCTTATATTTGGTTTAATTGGAGCTTCAATTGGAATCTTTGTCATTGTGTGTTTCTTGATAGGTTTGCATCTATGGTACAACAGGTTGGGGACGAGAAAAGGTGATGAGAATTTGTATATCTATGCAGAACCTACAGTGCAAGGGACTAGGTCTCGAGTGAAACCAAATACAGGGTCAATTTGGTTCAAGTTTGAGGACCTAATGAAGGCCACTAACAATTTTTCACCCCAGAACTTAATTGGAAGAGGTGGTTTTGGCATAGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCAGTTAAAAGGATAGAAGAATCAGCTTCTCAAGGAGATGAGGAATTCTACAGGGAGGTGGAGATTATCAGCAACTTGAAGCACCGCAATCTAGTGCAGCTAAGAGGGTGTTGTGTGGTTGATGAAGAAGAGGAGGAGGAGGATCCCAGGTACAAAGAAAGCCAAAAGTATCTTGTTTATGATTAA 1137 0.4213 MKPVFVLLLIFVVAPTKPFSSSSSPTISHSSNNSACPVGMDYVLTVPWNSSSCHNFQPFPSKTKHVQLPNLPTSKSCLHDFQSKLSSLSLPNNLVSSCFDPLQFVISANICPNIQSKQDWVNILGPTTQFNNGCKPELSVSANCDVCVTEDLNLLQKMNAIDGNASHSQDCFYFSILYAAGIANELSPESRGALSCIFELPLNNAQVRGARRKSHKHTLIFGLIGASIGIFVIVCFLIGLHLWYNRLGTRKGDENLYIYAEPTVQGTRSRVKPNTGSIWFKFEDLMKATNNFSPQNLIGRGGFGIVYKGILPDGTMVAVKRIEESASQGDEEFYREVEIISNLKHRNLVQLRGCCVVDEEEEEEDPRYKESQKYLVYD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272002g00004 378 SUPERFAMILY Protein kinase-like (PK-like) 269 359 IPR011009 -
Stsc272002g00004 378 Gene3D Phosphorylase Kinase; domain 1 261 378 - -
Stsc272002g00004 378 FunFam Receptor-like serine/threonine-protein kinase At4g25390 258 378 - -
Stsc272002g00004 378 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Stsc272002g00004 378 ProSiteProfiles Protein kinase domain profile. 292 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272002g00004 378 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 377 - -
Stsc272002g00004 378 Pfam SPARK 62 172 IPR043891 -
Stsc272002g00004 378 Pfam Protein tyrosine and serine/threonine kinase 296 358 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272002g00004 Stsc-Chr272002 28052 29272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272002g00004 31 378 Receptor kinase-like Gene Family AT1G11050 46.361 1.49e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc272002g00004 SPARK 9.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272002g00004 - - lja:Lj4g3v2693570.1 397.897