Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272000g00001 ATGCTTCTAATTATGCGTGTAAAGCTGAGAACAGTGAATGTTACACTTCAAGCAGTAGACTTGGTTACCTTTGCAACTGCTCTACTGGTTTTCAGGGAAATCCTTATCTCCTTCGTGGTTGCCAAGTCATGTGATAGTGCAAGTAGTAGGTGTGTGTGTGGAAGGGAGAGGGGATCCGACAAGGCGGCAACAAAGATGATGAAGATGGCTAATGGTAATAAGGATGGTGAGCAAGAGGAAGTAAATGATTGTTCTGGTGGAGCGATATGCAAGAACGTACCTGGTAGCTGTAAGTGTTCATGTCCAAAAGGATATGTTGGAAATGGGAAAGAAAATGGAACAAGATGCACTCGTAAGTCCAGGGCAGAAATCATTTTAATCATTGCATTGGGTGTCAGTGTTGGTGTCATAACAATACTTGTGATAAGCTTTCTTGTGTATTGGAGAATGAAGGAAACGAGGCTAAATAAACTTAAGGAACAGTTTTTTCAACAAAATGGTGGCTTTATCCTACTGCAACACATTTCAAGGCTTAGAGGGTCAATAGAAACAGCTAAAGTCTTCACTGAGGAAGAATTAAAGAAGGCCACCAACAACTTTGATGAAGCCAAGATCTTAGGCAAAGGGGGTCAAGGAACAGTTTATAAAGGATTACTCCCAGACAATAGAACCGTTGCAATTAAAAAATCCAAAATCAGTGACTCAAGCCAAGTTGAGCAATTCATCAATGAAGTTGTGTTGCTTTCCCAAATCAACCATAGAAATGTGGTTAGACTCTTAGGTTGTTGCTTAGAGACAGAAGTGCCTTTGCTTGTCTATGAGTTCATCCCCAATGGTACCATTTTTCAACATCTTCATGGTGATAACCAATCTTTCAAACTTACTTGGGCAACAAGATTGAGAATAGCAATAGAAACTGCTGGGGCCTTAGCATACTTGCACTCTGGTATTTCTATGCCAATCATACACAGAGACATCAAAACTACAAATATTCTTCTTGATGCTCATCTCACGGCAAAGATTTCTGATTTCGGAGCTTCAAAGATTGTTCCTCTTGATCAAACTGAATTAACCACTTTGGTGCAGGGGACAATGGGTTATCTTGACCCTGAATACATGCACACCAGCCAGTTAACTGAGAAAAGTGATGTTTATAGTTTTGGAGTCGTCCTAGCAGAGCTTCTGACAGGAAAGAAGGCACTCTCTTTCACTGATCCAGAGGTTAGAAACCTTGTGGCATACTTTGGTAGTTCAATGGAAGAAGGGCGGTTACTTGAGATTGTGGACAAACATATCATAAATGAGGCAAAGGTTGAGCACCTTATGGAATTTGCCAATGTTGCAAAGCAGTGTTTGAGAGTGAAGAGGGAAGAAAGGCCTACCATGAAAGAAGTTGCATTAGAACTTGAGGGACTTAGGGTAGTAGCTGGAGAGAAACACCGATGGGAAAATAGTGACAAATCATGTTCAGAAGAGACTAAAAGCTTGTTAAAAGTACCATCATCCTCTGTCTCTGTCTCTGATGTTGAAAGTTTTAAGTTTGATAGCATAAGTCAGGTTTCTATGTCACTGGTGGGTGGTGGAAGATGA 1590 0.4075 MLLIMRVKLRTVNVTLQAVDLVTFATALLVFREILISFVVAKSCDSASSRCVCGRERGSDKAATKMMKMANGNKDGEQEEVNDCSGGAICKNVPGSCKCSCPKGYVGNGKENGTRCTRKSRAEIILIIALGVSVGVITILVISFLVYWRMKETRLNKLKEQFFQQNGGFILLQHISRLRGSIETAKVFTEEELKKATNNFDEAKILGKGGQGTVYKGLLPDNRTVAIKKSKISDSSQVEQFINEVVLLSQINHRNVVRLLGCCLETEVPLLVYEFIPNGTIFQHLHGDNQSFKLTWATRLRIAIETAGALAYLHSGISMPIIHRDIKTTNILLDAHLTAKISDFGASKIVPLDQTELTTLVQGTMGYLDPEYMHTSQLTEKSDVYSFGVVLAELLTGKKALSFTDPEVRNLVAYFGSSMEEGRLLEIVDKHIINEAKVEHLMEFANVAKQCLRVKREERPTMKEVALELEGLRVVAGEKHRWENSDKSCSEETKSLLKVPSSSVSVSDVESFKFDSISQVSMSLVGGGR 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272000g00001 529 Gene3D Phosphorylase Kinase; domain 1 173 275 - -
Stsc272000g00001 529 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 66 484 IPR045274 GO:0007166
Stsc272000g00001 529 Gene3D Green fluorescent protein 84 157 IPR009017 -
Stsc272000g00001 529 Coils Coil 186 206 - -
Stsc272000g00001 529 FunFam Wall-associated receptor kinase 2 276 494 - -
Stsc272000g00001 529 FunFam Wall-associated receptor kinase 2 170 275 - -
Stsc272000g00001 529 CDD STKc_IRAK 206 472 - -
Stsc272000g00001 529 Pfam Protein kinase domain 201 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272000g00001 529 ProSiteProfiles Protein kinase domain profile. 200 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272000g00001 529 SMART egfca_6 80 117 IPR001881 GO:0005509
Stsc272000g00001 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Stsc272000g00001 529 SMART serkin_6 200 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272000g00001 529 SUPERFAMILY Protein kinase-like (PK-like) 183 469 IPR011009 -
Stsc272000g00001 529 Gene3D Transferase(Phosphotransferase) domain 1 276 495 - -
Stsc272000g00001 529 CDD EGF_CA 79 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272000g00001 Stsc-Chr272000 17056 65987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272000g00001 34 529 Receptor kinase-like Gene Family AT1G21230 48.649 3.02e-156 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc272000g00001 Pkinase 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272000g00001 - - aip:107607783 628.246