Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc271998g00018 | ATGAATCTTAGTCACTGCAAGGGATCCACCATGTCAACGCCTAGTTCATCAGGCTCACATCTCAGGTCCACCGGAGATGCTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTGGTGGTGGATGATGACCCCACCTGCCTCATGATCCTTGAGAAGATGCTTAAAGCTTGCCTCTATGAAGTTACAAAATGCAAGCGTGCTGAGGTTGCATTGTCACTTCTGAGAGAGAACAAGAATGGATTTGACATTGTTATAAGTGATGTGCATATGCCTGACATGGATGGATTTAAGCTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCCGCAGACGATGGAAAGCATGTTGTAATGAAGGGTGTGACACATGGTGCTTGTGATTACCTAATTAAACCCGTGCGCATCGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGACCGGTTGGAGAGATCCGGAGCAATCAGGCAGCATAGATGAAGGAGATCGGCAGCAAAAGGCATCTGATGATGCGGATTACTCATCGTCTGCAAATGAAGGGAAATGCTCAAAGAAGAGAAGGGATGAAGAAGAAGATGCAGATGAGAGGGATGATAGTTCGACTTTGAAGAAGCCACGAGTGGTTTGGTCTGTTGAGCTCCATCAACAGTTTATGGCTGCTGTAAACCAACTTGGAATTGACAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGACTTACCAGAGAAAACGTTGCTAGCCACCTTCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGTGTTTCACAGCAGCAGAATAACTTGAACAATCCCTTCATGAACCCAGATCCAACATTTGGGTCAACATCGATCAATGGAATTGACCTTCAAGCCCTTTCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGTCAACGGCAAAACCAGTTATGTCCATGCCTCTAGTTGAGCAACGGAACCTTTTCAGTTTTGAAAGCCCGAGATTAAGATTTGGAGAAGGGCAAATGCAACATTTGAATACTAATAAACCGATGAACTTGCTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATCTACACCAATCTGCCCAATCCCTTGGGAACTTGAATATGCGAGTCAATGCTTCTGTTGCACAGAGAAGCCCCTTGTTGATGCAGATGGGTCAATCCCAACCAAGAGGTCAGATTGTAGGTGAAAATGGTTCTCATGTTAACCAGCTTCCAACTTCATTGTTGCAACCATCGGTACCAAACCGAATTTCCAACGGTGTTATCAGAAATGGGATTGCTAGCACCAGCAACATAAATCCTGCTTATAATCAAGTACCACAAAGCTCTTCGTTTATGAATTTTCCCATGAATCAGACCAACGAGATGTCAGCAAGAAGTTTCCCTCTTGGAAGTAATCCTGGTATATCGAATATCACAACGAAGGGAATGTTACAAGAGGAAGTAACTTCAGGAATCAAAGGATCCAGCGGCTTTGTTCCGAGCTATGATATTTTTAATGAACTCCAACCCCAAAAATCCAACGATTGGGACTTAAGAAACGCTGGTCTGACATATGATGCTACTCAGCATTCAAATCATGTACAAGGTAACATTGATGTCTCAGTCTCACCATCAGTTTTAGTCCATCCGGGTTTTTCATCTATGCAACAAACTGGACAAAATAGAGATACTACTTCTTCAATGGGGAAAGCTGTGTTCTCCATGGGTGAAGGCATGGATCAAGGTAATCTCCAAAGCATTAGTCAGCCCCAGAATCCGCTTCACATCGACCATTCAGTAAGAGTGAAGTCTGAAAGAGTTCCTGATGCGAGCTCCCAGACTAACTTCTTCCCTGAGCAATATGGGCAGGAGGATCTTATGAGTGCACTTCTGAAACAGGAAGGCATTGGACTAGCCGAGAATGAGTTTGACTTCGACGGATATTCCTTAGACAACATTCCGGTCTAG | 2040 | 0.448 | MNLSHCKGSTMSTPSSSGSHLRSTGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLKACLYEVTKCKRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKTGWRDPEQSGSIDEGDRQQKASDDADYSSSANEGKCSKKRRDEEEDADERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQNNLNNPFMNPDPTFGSTSINGIDLQALSVAGQLPAQSLAKLQAAGLGRSTAKPVMSMPLVEQRNLFSFESPRLRFGEGQMQHLNTNKPMNLLHGIPTNMEPKQLANLHQSAQSLGNLNMRVNASVAQRSPLLMQMGQSQPRGQIVGENGSHVNQLPTSLLQPSVPNRISNGVIRNGIASTSNINPAYNQVPQSSSFMNFPMNQTNEMSARSFPLGSNPGISNITTKGMLQEEVTSGIKGSSGFVPSYDIFNELQPQKSNDWDLRNAGLTYDATQHSNHVQGNIDVSVSPSVLVHPGFSSMQQTGQNRDTTSSMGKAVFSMGEGMDQGNLQSISQPQNPLHIDHSVRVKSERVPDASSQTNFFPEQYGQEDLMSALLKQEGIGLAENEFDFDGYSLDNIPV | 679 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc271998g00018 | 679 | SMART | REC_2 | 36 | 148 | IPR001789 | GO:0000160 | |
Stsc271998g00018 | 679 | Gene3D | - | 211 | 273 | - | - | |
Stsc271998g00018 | 679 | PIRSF | RR_ARR_type-B | 15 | 671 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Stsc271998g00018 | 679 | Pfam | Response regulator receiver domain | 38 | 146 | IPR001789 | GO:0000160 | |
Stsc271998g00018 | 679 | MobiDBLite | consensus disorder prediction | 156 | 179 | - | - | |
Stsc271998g00018 | 679 | MobiDBLite | consensus disorder prediction | 156 | 211 | - | - | |
Stsc271998g00018 | 679 | Gene3D | - | 36 | 165 | - | - | |
Stsc271998g00018 | 679 | Pfam | Myb-like DNA-binding domain | 216 | 266 | IPR001005 | - | |
Stsc271998g00018 | 679 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 36 | 374 | IPR045279 | GO:0009736 | |
Stsc271998g00018 | 679 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Stsc271998g00018 | 679 | MobiDBLite | consensus disorder prediction | 189 | 211 | - | - | |
Stsc271998g00018 | 679 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 213 | 270 | IPR017930 | - | |
Stsc271998g00018 | 679 | SUPERFAMILY | Homeodomain-like | 211 | 271 | IPR009057 | - | |
Stsc271998g00018 | 679 | CDD | REC_typeB_ARR-like | 38 | 152 | - | - | |
Stsc271998g00018 | 679 | ProSiteProfiles | Response regulatory domain profile. | 37 | 152 | IPR001789 | GO:0000160 | |
Stsc271998g00018 | 679 | SUPERFAMILY | CheY-like | 35 | 156 | IPR011006 | - | |
Stsc271998g00018 | 679 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 214 | 267 | IPR006447 | GO:0003677 | |
Stsc271998g00018 | 679 | FunFam | Two-component response regulator | 210 | 273 | - | - | |
Stsc271998g00018 | 679 | FunFam | Two-component response regulator | 36 | 173 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc271998g00018 | Stsc-Chr271998 | 90961 | 94688 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc271998g00018 | 70 | 679 | Response Regulator Gene Family | AT3G16857 | 51.835 | 9.14e-180 | 523 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Stsc271998g00018 | Response_reg | 1.3e-22 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc271998g00018 | - | K14491 | gmx:100814930 | 989.564 |