LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271998g00018	ATGAATCTTAGTCACTGCAAGGGATCCACCATGTCAACGCCTAGTTCATCAGGCTCACATCTCAGGTCCACCGGAGATGCTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTGGTGGTGGATGATGACCCCACCTGCCTCATGATCCTTGAGAAGATGCTTAAAGCTTGCCTCTATGAAGTTACAAAATGCAAGCGTGCTGAGGTTGCATTGTCACTTCTGAGAGAGAACAAGAATGGATTTGACATTGTTATAAGTGATGTGCATATGCCTGACATGGATGGATTTAAGCTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCCGCAGACGATGGAAAGCATGTTGTAATGAAGGGTGTGACACATGGTGCTTGTGATTACCTAATTAAACCCGTGCGCATCGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGACCGGTTGGAGAGATCCGGAGCAATCAGGCAGCATAGATGAAGGAGATCGGCAGCAAAAGGCATCTGATGATGCGGATTACTCATCGTCTGCAAATGAAGGGAAATGCTCAAAGAAGAGAAGGGATGAAGAAGAAGATGCAGATGAGAGGGATGATAGTTCGACTTTGAAGAAGCCACGAGTGGTTTGGTCTGTTGAGCTCCATCAACAGTTTATGGCTGCTGTAAACCAACTTGGAATTGACAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGACTTACCAGAGAAAACGTTGCTAGCCACCTTCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGTGTTTCACAGCAGCAGAATAACTTGAACAATCCCTTCATGAACCCAGATCCAACATTTGGGTCAACATCGATCAATGGAATTGACCTTCAAGCCCTTTCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGTCAACGGCAAAACCAGTTATGTCCATGCCTCTAGTTGAGCAACGGAACCTTTTCAGTTTTGAAAGCCCGAGATTAAGATTTGGAGAAGGGCAAATGCAACATTTGAATACTAATAAACCGATGAACTTGCTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATCTACACCAATCTGCCCAATCCCTTGGGAACTTGAATATGCGAGTCAATGCTTCTGTTGCACAGAGAAGCCCCTTGTTGATGCAGATGGGTCAATCCCAACCAAGAGGTCAGATTGTAGGTGAAAATGGTTCTCATGTTAACCAGCTTCCAACTTCATTGTTGCAACCATCGGTACCAAACCGAATTTCCAACGGTGTTATCAGAAATGGGATTGCTAGCACCAGCAACATAAATCCTGCTTATAATCAAGTACCACAAAGCTCTTCGTTTATGAATTTTCCCATGAATCAGACCAACGAGATGTCAGCAAGAAGTTTCCCTCTTGGAAGTAATCCTGGTATATCGAATATCACAACGAAGGGAATGTTACAAGAGGAAGTAACTTCAGGAATCAAAGGATCCAGCGGCTTTGTTCCGAGCTATGATATTTTTAATGAACTCCAACCCCAAAAATCCAACGATTGGGACTTAAGAAACGCTGGTCTGACATATGATGCTACTCAGCATTCAAATCATGTACAAGGTAACATTGATGTCTCAGTCTCACCATCAGTTTTAGTCCATCCGGGTTTTTCATCTATGCAACAAACTGGACAAAATAGAGATACTACTTCTTCAATGGGGAAAGCTGTGTTCTCCATGGGTGAAGGCATGGATCAAGGTAATCTCCAAAGCATTAGTCAGCCCCAGAATCCGCTTCACATCGACCATTCAGTAAGAGTGAAGTCTGAAAGAGTTCCTGATGCGAGCTCCCAGACTAACTTCTTCCCTGAGCAATATGGGCAGGAGGATCTTATGAGTGCACTTCTGAAACAGGAAGGCATTGGACTAGCCGAGAATGAGTTTGACTTCGACGGATATTCCTTAGACAACATTCCGGTCTAG	2040	0.448	MNLSHCKGSTMSTPSSSGSHLRSTGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLKACLYEVTKCKRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKTGWRDPEQSGSIDEGDRQQKASDDADYSSSANEGKCSKKRRDEEEDADERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQNNLNNPFMNPDPTFGSTSINGIDLQALSVAGQLPAQSLAKLQAAGLGRSTAKPVMSMPLVEQRNLFSFESPRLRFGEGQMQHLNTNKPMNLLHGIPTNMEPKQLANLHQSAQSLGNLNMRVNASVAQRSPLLMQMGQSQPRGQIVGENGSHVNQLPTSLLQPSVPNRISNGVIRNGIASTSNINPAYNQVPQSSSFMNFPMNQTNEMSARSFPLGSNPGISNITTKGMLQEEVTSGIKGSSGFVPSYDIFNELQPQKSNDWDLRNAGLTYDATQHSNHVQGNIDVSVSPSVLVHPGFSSMQQTGQNRDTTSSMGKAVFSMGEGMDQGNLQSISQPQNPLHIDHSVRVKSERVPDASSQTNFFPEQYGQEDLMSALLKQEGIGLAENEFDFDGYSLDNIPV	679

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc271998g00018	679	SMART	REC_2	36	148	IPR001789	GO:0000160
Stsc271998g00018	679	Gene3D	-	211	273	-	-
Stsc271998g00018	679	PIRSF	RR_ARR_type-B	15	671	IPR017053	GO:0003677\|GO:0003700\|GO:0009736
Stsc271998g00018	679	Pfam	Response regulator receiver domain	38	146	IPR001789	GO:0000160
Stsc271998g00018	679	MobiDBLite	consensus disorder prediction	156	179	-	-
Stsc271998g00018	679	MobiDBLite	consensus disorder prediction	156	211	-	-
Stsc271998g00018	679	Gene3D	-	36	165	-	-
Stsc271998g00018	679	Pfam	Myb-like DNA-binding domain	216	266	IPR001005	-
Stsc271998g00018	679	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	36	374	IPR045279	GO:0009736
Stsc271998g00018	679	MobiDBLite	consensus disorder prediction	1	26	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271998g00018	Stsc-Chr271998	90961	94688	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271998g00018	70	679	Response Regulator Gene Family	AT3G16857	51.835	9.14e-180	523

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Stsc271998g00018		Response_reg	1.3e-22	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271998g00018	-		K14491	gmx:100814930	989.564

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