Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271998g00018 ATGAATCTTAGTCACTGCAAGGGATCCACCATGTCAACGCCTAGTTCATCAGGCTCACATCTCAGGTCCACCGGAGATGCTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTGGTGGTGGATGATGACCCCACCTGCCTCATGATCCTTGAGAAGATGCTTAAAGCTTGCCTCTATGAAGTTACAAAATGCAAGCGTGCTGAGGTTGCATTGTCACTTCTGAGAGAGAACAAGAATGGATTTGACATTGTTATAAGTGATGTGCATATGCCTGACATGGATGGATTTAAGCTTTTAGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCCGCAGACGATGGAAAGCATGTTGTAATGAAGGGTGTGACACATGGTGCTTGTGATTACCTAATTAAACCCGTGCGCATCGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAAGAGAAAGACCGGTTGGAGAGATCCGGAGCAATCAGGCAGCATAGATGAAGGAGATCGGCAGCAAAAGGCATCTGATGATGCGGATTACTCATCGTCTGCAAATGAAGGGAAATGCTCAAAGAAGAGAAGGGATGAAGAAGAAGATGCAGATGAGAGGGATGATAGTTCGACTTTGAAGAAGCCACGAGTGGTTTGGTCTGTTGAGCTCCATCAACAGTTTATGGCTGCTGTAAACCAACTTGGAATTGACAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGACTTACCAGAGAAAACGTTGCTAGCCACCTTCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGTGTTTCACAGCAGCAGAATAACTTGAACAATCCCTTCATGAACCCAGATCCAACATTTGGGTCAACATCGATCAATGGAATTGACCTTCAAGCCCTTTCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTTGGCAGGTCAACGGCAAAACCAGTTATGTCCATGCCTCTAGTTGAGCAACGGAACCTTTTCAGTTTTGAAAGCCCGAGATTAAGATTTGGAGAAGGGCAAATGCAACATTTGAATACTAATAAACCGATGAACTTGCTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATCTACACCAATCTGCCCAATCCCTTGGGAACTTGAATATGCGAGTCAATGCTTCTGTTGCACAGAGAAGCCCCTTGTTGATGCAGATGGGTCAATCCCAACCAAGAGGTCAGATTGTAGGTGAAAATGGTTCTCATGTTAACCAGCTTCCAACTTCATTGTTGCAACCATCGGTACCAAACCGAATTTCCAACGGTGTTATCAGAAATGGGATTGCTAGCACCAGCAACATAAATCCTGCTTATAATCAAGTACCACAAAGCTCTTCGTTTATGAATTTTCCCATGAATCAGACCAACGAGATGTCAGCAAGAAGTTTCCCTCTTGGAAGTAATCCTGGTATATCGAATATCACAACGAAGGGAATGTTACAAGAGGAAGTAACTTCAGGAATCAAAGGATCCAGCGGCTTTGTTCCGAGCTATGATATTTTTAATGAACTCCAACCCCAAAAATCCAACGATTGGGACTTAAGAAACGCTGGTCTGACATATGATGCTACTCAGCATTCAAATCATGTACAAGGTAACATTGATGTCTCAGTCTCACCATCAGTTTTAGTCCATCCGGGTTTTTCATCTATGCAACAAACTGGACAAAATAGAGATACTACTTCTTCAATGGGGAAAGCTGTGTTCTCCATGGGTGAAGGCATGGATCAAGGTAATCTCCAAAGCATTAGTCAGCCCCAGAATCCGCTTCACATCGACCATTCAGTAAGAGTGAAGTCTGAAAGAGTTCCTGATGCGAGCTCCCAGACTAACTTCTTCCCTGAGCAATATGGGCAGGAGGATCTTATGAGTGCACTTCTGAAACAGGAAGGCATTGGACTAGCCGAGAATGAGTTTGACTTCGACGGATATTCCTTAGACAACATTCCGGTCTAG 2040 0.448 MNLSHCKGSTMSTPSSSGSHLRSTGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLKACLYEVTKCKRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKTGWRDPEQSGSIDEGDRQQKASDDADYSSSANEGKCSKKRRDEEEDADERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQNNLNNPFMNPDPTFGSTSINGIDLQALSVAGQLPAQSLAKLQAAGLGRSTAKPVMSMPLVEQRNLFSFESPRLRFGEGQMQHLNTNKPMNLLHGIPTNMEPKQLANLHQSAQSLGNLNMRVNASVAQRSPLLMQMGQSQPRGQIVGENGSHVNQLPTSLLQPSVPNRISNGVIRNGIASTSNINPAYNQVPQSSSFMNFPMNQTNEMSARSFPLGSNPGISNITTKGMLQEEVTSGIKGSSGFVPSYDIFNELQPQKSNDWDLRNAGLTYDATQHSNHVQGNIDVSVSPSVLVHPGFSSMQQTGQNRDTTSSMGKAVFSMGEGMDQGNLQSISQPQNPLHIDHSVRVKSERVPDASSQTNFFPEQYGQEDLMSALLKQEGIGLAENEFDFDGYSLDNIPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271998g00018 679 SMART REC_2 36 148 IPR001789 GO:0000160
Stsc271998g00018 679 Gene3D - 211 273 - -
Stsc271998g00018 679 PIRSF RR_ARR_type-B 15 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc271998g00018 679 Pfam Response regulator receiver domain 38 146 IPR001789 GO:0000160
Stsc271998g00018 679 MobiDBLite consensus disorder prediction 156 179 - -
Stsc271998g00018 679 MobiDBLite consensus disorder prediction 156 211 - -
Stsc271998g00018 679 Gene3D - 36 165 - -
Stsc271998g00018 679 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Stsc271998g00018 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 36 374 IPR045279 GO:0009736
Stsc271998g00018 679 MobiDBLite consensus disorder prediction 1 26 - -
Stsc271998g00018 679 MobiDBLite consensus disorder prediction 189 211 - -
Stsc271998g00018 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 270 IPR017930 -
Stsc271998g00018 679 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Stsc271998g00018 679 CDD REC_typeB_ARR-like 38 152 - -
Stsc271998g00018 679 ProSiteProfiles Response regulatory domain profile. 37 152 IPR001789 GO:0000160
Stsc271998g00018 679 SUPERFAMILY CheY-like 35 156 IPR011006 -
Stsc271998g00018 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Stsc271998g00018 679 FunFam Two-component response regulator 210 273 - -
Stsc271998g00018 679 FunFam Two-component response regulator 36 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271998g00018 Stsc-Chr271998 90961 94688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271998g00018 70 679 Response Regulator Gene Family AT3G16857 51.835 9.14e-180 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc271998g00018 Response_reg 1.3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271998g00018 - K14491 gmx:100814930 989.564