Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271997g00002 ATGGCCACTTCTTCAAGATTTTTCTTATTGTGGATGCTTTCTAGTGTTGTTGGTCTTCCAATCTTCATTCATGCACAACAACAAACAGGGTTCATAAGCATTGATTGTGGTAATTCTAAGAATGTTGAGTACACAGATGATGCAACAAATATAAAGTACAGCACTGATGGTTCTTACATACAAACTGGTGTTAACAAAAACATCTCCCAAGAGTATAATTACCCCAGAAATCAAAACTTACCAGAGCCACTCTCTGATCTCAGAAGCTTTCCTCAAGGAGTGAGGAACTGTTATAGCTTAACAGCTGGAACACAAGGCAATTTACATTTGATAAGGGCTTCCTTCTTGTATGGAAACTATGACGGCGAAAACAAGCTCCCGGAATTCGATCTTTATGTCGGTGCCAATTTCTGGTCATCAGTGACATTTAGAATTGCCTCTGAGGAAGTTATATTGGAAATTATGAGCATGGCAGAATCAGATGTTACTGATGTTTGTCTTGTAAATAAGGGAATGGGAATTCCTTTTATCTCAGCATTGGAACTGAGGCCTATCTATAGTCCTGTTTATAATGCTGAGTTTGGTGAATCTTCTTCTTTGTTACTTTTCAAAAGATGGGACATTGGTTCAATCAATGCAACTGGAAGATATCAAGATGATGTCTATGATAGAATTTGGTCCTCTTATGATTCCTCCTCTTGGGATTCTGTAAACACTTCTTCAGAGATCAATGGCAATGCTAATGGTTATAGAGCACCATTTGAAGTCATAAGGACTGCTGCTAGGCCGAGGAATAACAGTGATGCTTTGGAATTTTCTTGGACCCCGGATGATCCGAATTCGAAATTTTATGTCTACTTGTACTTTGCTGAAGTGGATCAGCTCCAGAAAACACAGTTGAGGAAGTTCACTATATCTTGGAATGGATCTCCCTTGTCTGAACCTTTAGTTCCGCGCTACTTATATGCATCCGTTGTTTCTAATTCGAAACCATTGGTGGCGAATGAACATCATATTTCCATACAGAAGACAAAAGATTCAACCCTTCCACCTATTCTTAATGCTGTTGAGATTTATGTTGTAAGAGAGCTGGACACAATTCCAACACTTCAACAAGATGTTGATGCAGTGGTGGACATCAAAGGAAGATATGGAGTTGAAAGAAATTGGATGGGTGATCCTTGTGAGCCAAGGAATTACTTTTGGGAGGGCATAAGATGCAACTACAGCGCTTCACTTCCTCGCCGAATCATATCACTGAATCTAAGCTCAAGTAGTTTGAGTGGAATAATAGCTCCTTCCATTGCCAATCTCTCTCTGCTGCAATCATTGGATTTATCTAGCAACAGCTTAACCGGAACAGTGCCTCGGTTTTTAGAAGAACTGAGATTCCTTAAATATTTGAACTTACAGGGTAACAAATTATCAGGTTCTGTCAGTAATACTCTTGAAGAAAGATCAAGGGCTGGATTACTAACACTGAAGGTGGATGATCAAAATCGCTGCGGCTGGGGTGACAAAAAGAACAGAAAGGTTGTTGTTTCCATAGTCGCATCATTATCATCGGTTTTAGCTCTATTGGTAGTTTTCATCTTGATTTGGAAGTTTAGAAGAACTAAAAGCTCAGATGAGGAGATGAGCAAGCCCATCAATGGAGTAAGAACAGTAGCATCAAGGAACTGGCAATATACCTATGTCGAAGTCTTAGAGATCACCGAAAACTTCAAAATGGTCATCGGGAGAGGAGGATTTGGAACTGTGTATATTGGTAAGACAAAAAATGGAAACCAAGTTGCAGTTAAGGTCTTTTCTCCATCATCATCACAGGGGTCAAAGGAATTTCAGACCGAGGCTGAGCTCTTGATGACTGTTCATCACAAAAATTTGGTATCATTCATTGGTTACTGTGATGATGATAATAAAATGGCACTCATATATGAATACATGGCTAATGGCAACCTAAAAGATTATCTCTCAGTTAGAAACTCACATAGCTTGAGCTGGGAAAGGCGAATTCAGATTGCGATCGATGCTGCAGAGGGATTGGATTACCTGCACCATGGATGCAAGCCACCTATAATACACAGAGATGTCAAGTCAGCTAACATTCTTTTAAACAAAGATTTAGAAGCGAAGATAGCCGATTTCGGTCTCTCCAGGGTGTTTCGCAACGAAAAGCAAAATGCAGTATCAGCAGTCCCTCAGAATGATAACAAAAATGCAGAATCAGCAGTCATGGGAACCACAGGTTACCTTGATCCAGAATACTTCAAGTTGAGGAACTTGAATGAGAAGAGTGACATCTACAGCTTTGGAATTGTTCTGTTGGAACTAATCACGGGGCAGCCGGCCGTACTAAAAGGCGAGCAACGAATGCACATTCTTGATTGGGTAAGGCCTGAGCTAGAAAGTAAGGATTTGAGGAGGGTAATGGATCCAAGGCTGGAAGGGGAATATGATGAAAATTGTGCATGGAAAGCAATAGGAATAGCAATGTCATGCAGTGCATCAACCTCCATTCAGAGGCCTACAATGAGTGCTGTGTTATCAGAGTTAAAGCAGTGTTTGAAGATGGAATTGCCTGGTCATGGTTCTAGTGAAGCAATTGTGATGCCAAGAAATTTGTTTTGTGAATTTTATAGCTCATCTGAAGCATATTCCATGGATAGTGAATCAATCACCTATCCTTTCCCAAGATAA 2700 0.4019 MATSSRFFLLWMLSSVVGLPIFIHAQQQTGFISIDCGNSKNVEYTDDATNIKYSTDGSYIQTGVNKNISQEYNYPRNQNLPEPLSDLRSFPQGVRNCYSLTAGTQGNLHLIRASFLYGNYDGENKLPEFDLYVGANFWSSVTFRIASEEVILEIMSMAESDVTDVCLVNKGMGIPFISALELRPIYSPVYNAEFGESSSLLLFKRWDIGSINATGRYQDDVYDRIWSSYDSSSWDSVNTSSEINGNANGYRAPFEVIRTAARPRNNSDALEFSWTPDDPNSKFYVYLYFAEVDQLQKTQLRKFTISWNGSPLSEPLVPRYLYASVVSNSKPLVANEHHISIQKTKDSTLPPILNAVEIYVVRELDTIPTLQQDVDAVVDIKGRYGVERNWMGDPCEPRNYFWEGIRCNYSASLPRRIISLNLSSSSLSGIIAPSIANLSLLQSLDLSSNSLTGTVPRFLEELRFLKYLNLQGNKLSGSVSNTLEERSRAGLLTLKVDDQNRCGWGDKKNRKVVVSIVASLSSVLALLVVFILIWKFRRTKSSDEEMSKPINGVRTVASRNWQYTYVEVLEITENFKMVIGRGGFGTVYIGKTKNGNQVAVKVFSPSSSQGSKEFQTEAELLMTVHHKNLVSFIGYCDDDNKMALIYEYMANGNLKDYLSVRNSHSLSWERRIQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLNKDLEAKIADFGLSRVFRNEKQNAVSAVPQNDNKNAESAVMGTTGYLDPEYFKLRNLNEKSDIYSFGIVLLELITGQPAVLKGEQRMHILDWVRPELESKDLRRVMDPRLEGEYDENCAWKAIGIAMSCSASTSIQRPTMSAVLSELKQCLKMELPGHGSSEAIVMPRNLFCEFYSSSEAYSMDSESITYPFPR 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271997g00002 899 SUPERFAMILY Protein kinase-like (PK-like) 557 852 IPR011009 -
Stsc271997g00002 899 Pfam Leucine rich repeat 419 475 IPR001611 GO:0005515
Stsc271997g00002 899 CDD STKc_IRAK 579 854 - -
Stsc271997g00002 899 Pfam Protein tyrosine and serine/threonine kinase 576 852 IPR001245 GO:0004672|GO:0006468
Stsc271997g00002 899 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Stsc271997g00002 899 ProSiteProfiles Protein kinase domain profile. 573 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271997g00002 899 SUPERFAMILY L domain-like 398 483 - -
Stsc271997g00002 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Stsc271997g00002 899 FunFam Leucine-rich repeat receptor-like protein kinase 551 648 - -
Stsc271997g00002 899 FunFam Leucine-rich repeat receptor-like kinase 372 502 - -
Stsc271997g00002 899 PANTHER OS07G0107800 PROTEIN-RELATED 32 856 - -
Stsc271997g00002 899 Gene3D Ribonuclease Inhibitor 376 490 IPR032675 -
Stsc271997g00002 899 SMART serkin_6 573 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271997g00002 899 Pfam Malectin-like domain 34 360 IPR024788 -
Stsc271997g00002 899 Gene3D Phosphorylase Kinase; domain 1 579 649 - -
Stsc271997g00002 899 Gene3D Transferase(Phosphotransferase) domain 1 650 863 - -
Stsc271997g00002 899 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 649 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271997g00002 Stsc-Chr271997 28989 32840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271997g00002 1 860 Receptor kinase-like Gene Family AT4G29180 52.223 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc271997g00002 Malectin_like 7.3e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271997g00002 - - lang:109342711 1237.25