Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271996g00003 ATGTCGTCGAACAGTTCTTTGAATGTGGAATTGTCGAAGAAGACATCTCTTTTTGGTTTGAAACGGTGGGTTTTGATTGGGATTGGAGTTAGTGCCTTTATAGTGCTGATTCTTGGTGTATTGTCTATATGGGTGATGTTTCGGAGAAAATCTAGGAGATCCGTTGACAAGTACTCTCAATCCAAGATACCGAATGTCTCGAAAGATATCAGGGTTGACAAGGTTGGTGTGCAGAGTTCTTATGTCGAGCCGGAGAATGTGTCTGTTTCGGTTCATGACAAGGCAAATGATAAGAGTGCTGAGAAGGTGACAGTTCATTTGGCCATGAGCAAGTCCAGTGATCATGATAATATTAGTCAGTGCAGTTCAAGCTATCACCACGAGAGAGGTTTTAGTTCAATGTCTGGGGAAGAAGGAAGCTCCGGGAATGGTAAGAAGCAGTCTACATTGTCGTACGGAGGAGGGGTGACTGCTTCTCCTTTAGTTGGGTTGCCGGAATTTTCTCATCTTGGGTGGGGCCACTGGTTTACACTCAGAGATCTTCAACTAGCAACCAACCGTTTCTCGCAAGAGAATGTTATCGGTGAGGGTGGATATGGGGTTGTTTACAGGGGCAGATTAATCAATGGAAGCGAGGTTGCAGTGAAGAAACTTCTTAACAATTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCCATAGGTCATGTTAGACATAAACATCTCGTGCGCCTGCTTGGATATTGTGTAGAGGGTGTTAACAGGCTGCTAGTGTACGAATATGTGAATAATGGTAACTTAGAGCAATGGCTGCATGGGGCCATGGAACAAGGGACACTTACCTGGGAGGCTCGCATGAAGGTTATACTCGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATTGAACCAAAAGTTGTTCACCGGGATATAAAGTCCAGCAATATATTGATTGATGACGAGTTCAACGCAAAGGTTTCCGATTTTGGTCTGGCCAAACTATTGGATTCAGGAGAAAGTCATATAACAACTAGAGTTATGGGAACATTCGGTTATGTGGCACCTGAATATGCTAATAGTGGCCTCTTAAACGAGAAGAGCGACATTTACAGCTTCGGTGTCCTCCTGCTGGAAGCAGTTACCGGAAGGGACCCTGTAGACTATGCTCGTCCGGCTAATGAGGTTAATCTCGTTGAATGGCTCAAGATGATGGTGGGAACGAGGAGGGCTGAGGAAGTAGTAGACTCAAGACTTGAGGTTAAACCAACGACGCGCGCTTTGAAGCGTGCCCTTCTTGTTGCGCTGAGGTGCGTCGATCCTGATGCGGATAAAAGGCCTAAAATGAGTCAAGTTGTAAGGATGCTTGAAGCTGACGAATATCCGTTTCGAGAGGATCGAAGGAATCGAAAGAGCCGCACTGCCAGCATGGAAATTGAATCCGCTAGTTGCGGTCCATCCAATGCCGAAAAGGCAGGGAATTACGAAGGCATTGTGCCGGCGAGGACGGAGGAATAG 1524 0.4619 MSSNSSLNVELSKKTSLFGLKRWVLIGIGVSAFIVLILGVLSIWVMFRRKSRRSVDKYSQSKIPNVSKDIRVDKVGVQSSYVEPENVSVSVHDKANDKSAEKVTVHLAMSKSSDHDNISQCSSSYHHERGFSSMSGEEGSSGNGKKQSTLSYGGGVTASPLVGLPEFSHLGWGHWFTLRDLQLATNRFSQENVIGEGGYGVVYRGRLINGSEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVNRLLVYEYVNNGNLEQWLHGAMEQGTLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPANEVNLVEWLKMMVGTRRAEEVVDSRLEVKPTTRALKRALLVALRCVDPDADKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESASCGPSNAEKAGNYEGIVPARTEE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271996g00003 507 MobiDBLite consensus disorder prediction 465 507 - -
Stsc271996g00003 507 Pfam Protein kinase domain 189 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271996g00003 507 PANTHER OS01G0323000 PROTEIN 1 481 - -
Stsc271996g00003 507 Coils Coil 208 228 - -
Stsc271996g00003 507 FunFam Putative receptor-like serine/threonine-protein kinase 264 473 - -
Stsc271996g00003 507 SUPERFAMILY Protein kinase-like (PK-like) 172 460 IPR011009 -
Stsc271996g00003 507 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Stsc271996g00003 507 MobiDBLite consensus disorder prediction 110 150 - -
Stsc271996g00003 507 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Stsc271996g00003 507 ProSiteProfiles Protein kinase domain profile. 188 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271996g00003 507 SMART serkin_6 188 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271996g00003 507 Gene3D Transferase(Phosphotransferase) domain 1 264 476 - -
Stsc271996g00003 507 CDD STKc_IRAK 194 459 - -
Stsc271996g00003 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Stsc271996g00003 507 FunFam Putative receptor-like protein kinase 170 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271996g00003 Stsc-Chr271996 27861 31849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271996g00003 19 461 Trihelix Transcription Factor Family AT1G70460 40.889 7.62e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc271996g00003 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271996g00003 - - gmx:100778444 842.802