Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271995g00008 ATGGAATCGAAAGGTGGGAGCAGTGGAGGAAGTGGAAGCAAGTGTGGGCGATGGAATCCAACGGCTGAACAAGTAGAAGTTCTGAGTTCACTGTTCAGGTCTGGTCTGCGCACACCAACCACTGATCAGATTCAGAGGATCTCCAATCACCTCAGCTTTTACGGCAAGATTGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAAGCTAGGGACAGACACAATAAGCGCCGCAAGCTCTCTTCTGCTTCCTTTCATCATCATCATCATCTTACCAAGGATCTCAATATTCTTCGCTCTCAAAGTTTAGCTGAGATGTATCAAGTTTCAGAGCCTGCTGAGAATAATAATAATAGGGTGATTGAGACTCTTCAGCTCTTCCCCTTGAACTCCTTTGGTGAATCCGAATCAGAGAAGCTGAGAGTGCATGAAAATGATGAAAATGGTGATCATCATCAATGCATGGATCATCATGATGACGATGATACTGTGTTCTCATGCACATTAATGGGAGAACAAATGGAGTATCCTCCATTAGACCTGCGCTTGAGCTTTCTCTAA 564 0.4379 MESKGGSSGGSGSKCGRWNPTAEQVEVLSSLFRSGLRTPTTDQIQRISNHLSFYGKIESKNVFYWFQNHKARDRHNKRRKLSSASFHHHHHLTKDLNILRSQSLAEMYQVSEPAENNNNRVIETLQLFPLNSFGESESEKLRVHENDENGDHHQCMDHHDDDDTVFSCTLMGEQMEYPPLDLRLSFL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271995g00008 187 CDD homeodomain 17 77 IPR001356 GO:0003677
Stsc271995g00008 187 SMART HOX_1 13 80 IPR001356 GO:0003677
Stsc271995g00008 187 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 92 IPR044555 GO:0003700|GO:0099402
Stsc271995g00008 187 Pfam Homeodomain 15 75 IPR001356 GO:0003677
Stsc271995g00008 187 Gene3D - 14 82 - -
Stsc271995g00008 187 FunFam WUSCHEL-related homeobox 11 14 83 - -
Stsc271995g00008 187 ProSiteProfiles 'Homeobox' domain profile. 11 76 IPR001356 GO:0003677
Stsc271995g00008 187 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271995g00008 Stsc-Chr271995 62124 63099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271995g00008 4 187 Wox Gene Family AT3G11260 53.191 1.21e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc271995g00008 Homeodomain 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271995g00008 - - gmx:100820304 210.305