Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271995g00007 ATGGAAGCGAAGGAGCAGGATGTGTCGTTGGGAGCTAACAAGTTCCCGGAGAGGCAGCCGATCGGTACGGCGGCGCAGAGCCAAGACGAGGCCAAGGACTACCAGGAGCCACCGCCAGCTCCACTGTTCGAGCCATCTGAGCTGACGTCATGGTCTTTCTACAGAGCTGGAATCGCAGAGTTCGTAGCCACTTTCCTTTTTCTCTACATCACCATCTTGACCGTCATGGGCGTCAACAGAGCTCCTTCTAAGTGTGCTTCCGTCGGCATCCAAGGTATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCCGGTATCTCAGGGGGTCATATAAACCCGGCAGTGACGTTTGGGTTGTTCTTGGCGAGGAAGTTGTCGTTGACAAGGGCGTTGTTCTACATAGTGATGCAGTGCCTGGGAGCTATCTGCGGTGCTGGTGTTGTGAAGGGATTCGAGGGGAAGAACTTGTATGGAACCTATGGAGGTGGTGCCAACAAGGTGAACGATGGTTACACCAAGGGTGATGGTCTTGGTGCTGAGATCGTTGGTACCTTCATCCTTGTCTACACCGTCTTCTCCGCCACCGATGCTAAGCGTAACGCCAGAGACTCTCACGTCCCTATTTTGGCACCGTTGCCAATTGGATTCGCTGTGTTCTTGGTGCACTTGGCCACCATCCCTATCACCGGAACTGGTATCAACCCTGCTCGCAGTCTTGGTGCTGCTATCATCTTCAACAAGCACGATGGCTGGCATGAACACTGGGTGTTCTGGGTTGGACCTTTCATTGGTGCAGCTCTCGCAGCTCTCTACCACGTGGTCGTGATCAGAGCCATTCCCTTCAAGTCCAAGTGA 870 0.5425 MEAKEQDVSLGANKFPERQPIGTAAQSQDEAKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRAPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFEGKNLYGTYGGGANKVNDGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKHDGWHEHWVFWVGPFIGAALAALYHVVVIRAIPFKSK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271995g00007 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 Gene3D Glycerol uptake facilitator protein. 40 287 IPR023271 -
Stsc271995g00007 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
Stsc271995g00007 289 SUPERFAMILY Aquaporin-like 47 281 IPR023271 -
Stsc271995g00007 289 FunFam Probable aquaporin PIP1-2 40 289 - -
Stsc271995g00007 289 MobiDBLite consensus disorder prediction 1 39 - -
Stsc271995g00007 289 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc271995g00007 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271995g00007 Stsc-Chr271995 50597 52804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271995g00007 1 289 Major Intrinsic Protein MIP AT4G23400 86.505 3.57e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271995g00007 K09872 - gmx:100775766 526.554