Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271994g00009 ATGGCACCTCTCATTGTTGATACAAAAGATGTTGTATTTATCAAACCATCAAAGTCTATTCCTTCCTCTATTCTTTCTCTATCTACACTTGACAACAGACCTGACCTTAATATGCTATGCCATATCATTCATGTTTATCAATCACAAAATAATGATGGTTACCCAAATGACCAAATTGACCCTAATCCTATTAATGTGCTAAAAGAAGCACTCTCAAAGGCCTTGTCCTATTACTACCCTCTTGCCGGAAAGCTAGTCAAACATGATGATGGCAAGTTTAGAGTCCATTACAATTCCAATGATGGAGTCCCATTTATAGAAGCAAATGCTAATTGCAATCTTTCTTCTCTTCATTACCTTGATAGTAGTGAAGACATGAAAATTGCAAAAGACTTGGCCTTTGAGCCTCCTTCACAAGATGATCAAAATGGTCACCAATGCCCTATAATAGGGTTTAAGGTAACCAAGTTTCTATGTGGGGGATTCACAATCGGAATTGGGGCCTCACATGTTGTATGTGATGGATTTGGAGTATCTCAATTTCTTCATGCCGTAATTGAGTTAGCGAGAGGAAAAAGCGAGCCGTCGATAAAACCTGTTTGGGACAGGCATAGGCTAATGGGATCAATTACCAAAACGCCCTTGCCAAGTCCCATCGATAATCACTCGGCCGCGGTTTCACCATATCTTCCTACCACAACACTCATCCATGAATGCTTTAAGGTGGATGGAGAGAGCATAAAAAAACTCAAAACGAGTTTGACCAAAGAATTATTCAATAATCAAAATAACATTAAGACCATGAATGAAATTGTCACAAACTTTGAAGCACTCTCTTCTTATATTTGGAGGGCAAAGGCCAAAGCATTGAAACTAAACTATGATGGGAAAACAATGCTTGGTATATTAGTTGGGGCAAGAAGACATGTGGATCCTCCTTTGCCTGAAGGGTATTATGGGAATGCAATTGTGGATGCAAATGTTGTCCTAACAGTTAAAGAACTCGTTGAGAAACCACTCTCAGAAGTTGTGAAGCACATCAAAGAGATCAAGAAAGTTGCATTTACAAGAAACTACATCGTGGACTCAATCAACACTTTGGAGACAAAAGAACAAGATTACAATGTGGAAGGTATTGGTGCATATTTTAACTTGACCGATTGGAAGCATTTGGGTTTCATGGAAAACATGGATTTTGGAGGGAATGTTCTTGTGAACTTCTTACCAGCACCATGCAACATGTTTGCCGCGGTTGATTTGTGCATTTTTGCACCTCCTTGTAAGTTGGATTACTCATCAATCAAAGATGGAGGAATTAGGGTTTTTGTGTCTCTTCCAAGTGCTGCCATGGCCAAGTTTAGGGAGGAGATGGAAGCTCTTGCATACATTTCTTAA 1395 0.3935 MAPLIVDTKDVVFIKPSKSIPSSILSLSTLDNRPDLNMLCHIIHVYQSQNNDGYPNDQIDPNPINVLKEALSKALSYYYPLAGKLVKHDDGKFRVHYNSNDGVPFIEANANCNLSSLHYLDSSEDMKIAKDLAFEPPSQDDQNGHQCPIIGFKVTKFLCGGFTIGIGASHVVCDGFGVSQFLHAVIELARGKSEPSIKPVWDRHRLMGSITKTPLPSPIDNHSAAVSPYLPTTTLIHECFKVDGESIKKLKTSLTKELFNNQNNIKTMNEIVTNFEALSSYIWRAKAKALKLNYDGKTMLGILVGARRHVDPPLPEGYYGNAIVDANVVLTVKELVEKPLSEVVKHIKEIKKVAFTRNYIVDSINTLETKEQDYNVEGIGAYFNLTDWKHLGFMENMDFGGNVLVNFLPAPCNMFAAVDLCIFAPPCKLDYSSIKDGGIRVFVSLPSAAMAKFREEMEALAYIS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271994g00009 464 Pfam Transferase family 6 459 - -
Stsc271994g00009 464 Gene3D - 222 457 IPR023213 -
Stsc271994g00009 464 Gene3D - 4 218 IPR023213 -
Stsc271994g00009 464 PANTHER ACYL TRANSFERASE 4 6 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271994g00009 Stsc-Chr271994 44440 45914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271994g00009 65 400 Monolignol Biosynthesis Gene Families AT5G48930 29.379 3.94e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271994g00009 K20240 - gmx:100801843 471.47