Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271994g00007 ATGGAAAATAAAGAAAAACCCCTTAAAATTATCAAACAAGATGTTGTACTTGTGAAACCATCAAAACCCACTCCTTCATCTGTTCTTCCTCTATCTACAATTGACAATAGACCTGAACTTAATACACTATGCCAAACCATTCACATATTTCAGACACCAAATAACATCACCCAAAGAGATCTTGTTCTTAAGATTAAAGAAGCAATTTCAGAAGCATTGTTCTATTACTATCCTCTTGCCGGAAGGCTAGTAAAGCATGCTGATGGAAAACTTCGAATCCATTGCAGAGCGGATGGAGTTCCATATGTAGAAACCACTGCAAATTGCAATCTTTCTTCCCTTCACTACCTTAATGGCAGTGACAGGGAGAATGCAAAACACTTAGCCTTTAATAGTAATGCTTTTGAAAATGGTTACCAATATCCTCTGGGGATAAAGGTGACCAAGTTTCTCTGCGGCGGGTTCGCAATTGGAATAGCCGCATCACATGCTGTTTTTGATGGGAATGGAGGTTCTCAATTCTTTAAAGCCATAGCTGAACTCGTGAGCGGAAAAAGCGAGCCAGATGTGAAACCTGTGTGGGAGAGGGAAAGGTTAAATGGGTCAATTACTGAACATCCATTGCAAAGTCCTATGGATGAAGCCTCGGCCGCGGTTTCACCTTATTTGCCCACCACAACACTTGTGCATGAATGTTTCAAGGTGGATAGTAAGAGCATAAAAAGACTCAAAGTGAGTTTAACCAACGAAATTAGTGATAATATTGACTCTTTGGAGGGTGAAAGCTTTACAAGTTTTGAAGCCCTTGGTGCTTATGTTTGGAGGTCAAGAACTAGAGCCTTGAAACTCAACTCCGATGGAAAAACTTCATTGGCTATTGTTGTAGGGTTAAGAAGGAATCACTCGTTGGTTCCTCCTTTGCCTGAAGGGTATTATGGGAATGCTTTTGTTGATCCAAAGGTTGTGCTAACTGTAAAGGAATTGAATGAAATGCCACTCTCACATGTTGTGAAGATGATCAACGAGGCTAAGAAGCTTGGTTTCTCAAGAGAGTATATTAAGAATCATATTGACACAACAGAGACAAAGACAAAGACAGAGCAGTTTGATTATCAAGGTATTGGTGCATCTATGGTTTTGTCTAGTTGGTTTTATTTGGGCATGTTGGAAAACATGGATTTAGGATGGGCTAAGCCGGTGAACATGGTACCGGCACCACGCGACGTGTTTGGGACTGTTGGGTTGTGGATTTTCACACCTCCTAGTGACTTGGATCCTTCAATGAATGGAGGTGTTAGAATCTTTGTTTCTCTACCCAGTGATGCTATGCCCAAGTTCAAGGAAGAGATGGAAGCTCTCAAACTTGTTAAACCCTTCAGCTGA 1383 0.41 MENKEKPLKIIKQDVVLVKPSKPTPSSVLPLSTIDNRPELNTLCQTIHIFQTPNNITQRDLVLKIKEAISEALFYYYPLAGRLVKHADGKLRIHCRADGVPYVETTANCNLSSLHYLNGSDRENAKHLAFNSNAFENGYQYPLGIKVTKFLCGGFAIGIAASHAVFDGNGGSQFFKAIAELVSGKSEPDVKPVWERERLNGSITEHPLQSPMDEASAAVSPYLPTTTLVHECFKVDSKSIKRLKVSLTNEISDNIDSLEGESFTSFEALGAYVWRSRTRALKLNSDGKTSLAIVVGLRRNHSLVPPLPEGYYGNAFVDPKVVLTVKELNEMPLSHVVKMINEAKKLGFSREYIKNHIDTTETKTKTEQFDYQGIGASMVLSSWFYLGMLENMDLGWAKPVNMVPAPRDVFGTVGLWIFTPPSDLDPSMNGGVRIFVSLPSDAMPKFKEEMEALKLVKPFS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271994g00007 460 PANTHER ACYL TRANSFERASE 4 10 452 - -
Stsc271994g00007 460 Gene3D - 6 213 IPR023213 -
Stsc271994g00007 460 Gene3D - 214 450 IPR023213 -
Stsc271994g00007 460 Pfam Transferase family 16 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271994g00007 Stsc-Chr271994 30202 31584 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271994g00007 8 448 Monolignol Biosynthesis Gene Families AT5G48930 24.295 4.93e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271994g00007 K20240 - gmx:100801843 504.982