Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271993g00014 ATGGAAAAATACGAGAAGTTGGAGAAGGTTGGGGAAGGAACATATGGAAAAGTATACAAGGCAAAAGAGAAGGAAACTGGACAAATTGTTGCATTGAAGAAGACACGTTTAGAGATGGATGAAGAAGGTGTCCCTCCCACTGCCCTTAGAGAGATCTCCCTCCTCCAAATGCTCTCTCAATCCATCTACATTGTCCGCCTTTTAGCCGTCGAGCACGTCGACAAAGTCCCTAAGTCCGCCCCCGCCTCCGCCGCCACCAAGCCCCTTCTCTACCTTGTCTTTGAGTACCTTGATACTGACCTCAAGAAGTTCATTGATTCGCACCGCAAGGGCCCCAATCCGAGGGTGCTTCCTCCTCCCCTAATCCAGAGCTTCCTTTTCCAGCTATGCAAGGGTGTTGCACATTGCCATAGCCATGGTGTCCTTCACCGTGACCTCAAGCCTCAGAACCTCCTCCTTGACCAGAAAAAGGGGATTCTTAAGATTGCTGATCTTGGACTCGGACGAGCCTTCACTGTCCCTCTCAAGAGTTACACTCATGAAATTGTCACCCTTTGGTATAGAGCTCCTGAGGTCTTGCTTGGAACCACCCATTACTCAACTGGGGTTGACATGTGGTCTGTTGGATGCATCTTTGCTGAAATGGTGAGAAGGCAAGCTCTATTTCCAGGGGATTCTGAGTTCCAACAGCTTCTGAACATATTCAAGATTTTGGGAACTCCAACTGAGGAGCAATGGCCAGGAGTTACTTCGCTTCGTGATTGGCATACCTACCCAAAATGGGAACCTCAGAACTTGGCAAGGACTGTGCCAAACTTGGGACCTGATGGAGTAGACCTTCTCACGAAAATGCTAAAGTATAACCCTGCTGAGAGAATCTCTGCCAAGGCAGCACTTGATCATCCTTACTTTGACAGTCTTGACAAGTCTCAGTATTAA 939 0.4824 MEKYEKLEKVGEGTYGKVYKAKEKETGQIVALKKTRLEMDEEGVPPTALREISLLQMLSQSIYIVRLLAVEHVDKVPKSAPASAATKPLLYLVFEYLDTDLKKFIDSHRKGPNPRVLPPPLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQKKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGTTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLNIFKILGTPTEEQWPGVTSLRDWHTYPKWEPQNLARTVPNLGPDGVDLLTKMLKYNPAERISAKAALDHPYFDSLDKSQY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271993g00014 312 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc271993g00014 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Stsc271993g00014 312 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Stsc271993g00014 312 FunFam Cyclin-dependent kinase 2 100 311 - -
Stsc271993g00014 312 Gene3D Transferase(Phosphotransferase) domain 1 100 312 - -
Stsc271993g00014 312 SMART serkin_6 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271993g00014 312 PANTHER CELL DIVISION PROTEIN KINASE 1 304 - -
Stsc271993g00014 312 FunFam Cyclin-dependent kinase B2,2 1 98 - -
Stsc271993g00014 312 SUPERFAMILY Protein kinase-like (PK-like) 1 307 IPR011009 -
Stsc271993g00014 312 Pfam Protein kinase domain 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271993g00014 312 ProSiteProfiles Protein kinase domain profile. 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271993g00014 Stsc-Chr271993 67374 69602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271993g00014 1 312 Core Cell Cycle Gene Families AT3G54180 83.654 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Stsc271993g00014 Pkinase 4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271993g00014 K07760 - gmx:100805119 573.933